Publications by authors named "Alan Simmons"

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Noninvasive Vagus Nerve Stimulation Reduces Withdrawal-Related Affective Distress and Improves Functional Outcomes in Alcohol Use Disorder: A Feasibility and Acceptability Pilot Study.
Ruth Klaming, Katia M Harlé, Imanuel R Lerman, Sonya B Norman, Irina A Strigo, Alan N Simmons

Neuromodulation· December 2025

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The nexus between neighborhood socioeconomic environment and substance-positive driving behavior: A spatial analysis in the Chicago metropolitan area.
Seunghoon Oh, Mickey Edwards, Alan J Simmons

J Safety Res· December 2025

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Biological Markers of Brain Network Connectivity and Pain Sensitivity Distinguish Low Coping from High Coping Veterans with Persistent Post-Traumatic Headache.
Katrina S Monroe, Dawn M Schiehser, Aaron W Parr, Alan N Simmons, Chelsea C Hays Weeks

J Neurotrauma· November 2025

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Opioid Craving in Chronic Pain Management: A Structural Equation Model of Veterans in Pain Rehabilitation.
Irina A Strigo, Tiffany Toor, Andrea D Spadoni, Sarah Palyo, Sara Librodo, Alan N Simmons

Mil Med· November 2025

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A Personal and Scientific Introduction to the Work of A.D. (Bud) Craig on Interoception and the Insular Cortex.
Irina A Strigo, Alan N Simmons, Marc Wittmann

Curr Top Behav Neurosci· October 2025

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The Intersection of Interoception and Anticipation Related to Pain.
Irina A Strigo, Alan N Simmons

Curr Top Behav Neurosci· October 2025

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Interoception: Synthesizing Insights and Charting New Frontiers.
Alan N Simmons, Marc Wittmann, Irina A Strigo

Curr Top Behav Neurosci· October 2025

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The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical Data.
Taha Mohseni Ahooyi, Benjamin Stear, J Alan Simmons, Vincent T Metzger, Praveen Kumar

bioRxiv· October 2025

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Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors.
Monica E Brown, Verda E Miranda, Simone Nevills, Ruiying Hu, Prasanna K Dadi, Alan J Simmons

Nat Commun· July 2025

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Unbiased recording of clonal potency reveals species-specific regulation of mammalian intestine.
Mirazul Islam, Matthew E Bechard, Yilin Yang, Alan J Simmons, Yanwen Xu

bioRxiv· June 2025

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Atf4 Protects Islet β-Cell Identity and Function Under Acute Glucose-Induced Stress but Promotes β-Cell Failure in the Presence of Free Fatty Acid.
Mahircan Yagan, Sadia Najam, Ruiying Hu, Yu Wang, Mathew T Dickerson, Alan J Simmons

Diabetes· May 2025

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Multiomic spatial atlas shows deleted in malignant brain tumors 1 (DMBT1) glycoprotein is lost in colonic dysplasia.
Emily H Green, Subhag R Kotrannavar, Megan E Rutherford, Hannah M Lunnemann, Harsimran Kaur, Alan J Simmons

J Pathol· May 2025

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Dipeptidase-1-knockout mice develop invasive tumors with features of microsatellite-unstable colorectal cancer.
Sarah E Glass, Matthew E Bechard, Zheng Cao, Radhika Aramandla, Ping Zhao, Alan J Simmons

JCI Insight· May 2025

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Bayesian deconvolution for computational cognitive modeling of fMRI data.
Jonathon R Howlett, Katia M Harlé, Alan N Simmons, Charles T Taylor

Neuroimage· May 2025

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Induced Neural Progenitor Specification from Human Pluripotent Stem Cells by a Refined Synthetic Notch Platform.
Catherine A Hamann, Andrew Kjar, Hyosung Kim, Alan J Simmons, Hannah J Brien

ACS Synth Biol· May 2025

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Temporally discordant chromatin accessibility and DNA demethylation define short- and long-term enhancer regulation during cell fate specification.
Lindsey N Guerin, Timothy J Scott, Jacqueline A Yap, Annelie Johansson, Fabio Puddu, Alan J Simmons

Cell Rep· May 2025

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Deregulated Myt3 translation predisposes islet β-cells to dysfunction under obesity-induced metabolic stress.
Ruiying Hu, Yu Wang, Mahircan Yagan, Yanwen Xu, Alan J Simmons

bioRxiv· May 2025

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Diabetes-associated MYT1 and MYT3 regulate human β-cell insulin secretion and survival via other diabetes-risk genes.
Ruiying Hu, Mahircan Yagan, Yu Wang, Xin Tong, Nala Hamilton, Alan J Simmons

bioRxiv· April 2025

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A randomized controlled trial of computerized cognitive training to improve working memory in individuals with elevated repetitive negative thinking: Behavioral and neural outcomes.
Jessica Bomyea, Morgan M Caudle, Nathalie Dugas, Raeanne C Moore, Alan N Simmons

J Mood Anxiety Disord· March 2025

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Homo Sapiens Chromosomal Location Ontology: A Framework for Genomic Data in Biomedical Knowledge Graphs.
Taha Mohseni Ahooyi, Benjamin Stear, J Alan Simmons, Christopher M Nemarich, Jonathan C Silverstein

Sci Data· January 2025

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Pathobiont-triggered induction of epithelial IDO1 drives regional susceptibility to Inflammatory Bowel Disease.
Paige N Spencer, Jiawei Wang, Erin P Smith, Luisella Spiga, Alan J Simmons

bioRxiv· January 2025

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Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data.
Benjamin J Stear, Taha Mohseni Ahooyi, J Alan Simmons, Charles Kollar, Lance Hartman

Sci Data· December 2024

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Assessing social anhedonia in a transdiagnostic sample: Insights from a computational psychiatry lens.
Katia M Harlé, Danielle N Dun, Andrea D Spadoni, Jonathon R Howlett, Alan N Simmons

J Mood Anxiety Disord· December 2024

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Temporal recording of mammalian development and precancer.
Mirazul Islam, Yilin Yang, Alan J Simmons, Vishal M Shah, Krushna Pavan Musale

Nature· October 2024

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Enhancing chronic low back pain management: an initial neuroimaging study of a mobile interoceptive attention training.
Irina A Strigo, Sergio Garcia Guerra, Salvatore Torrisi, Emily Murphy, Tiffany Toor, Alan N Simmons

Front Pain Res (Lausanne)· September 2024

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