Publications by authors named "Alexander J Probst"

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A new view of the tree of life.
Laura A Hug, Brett J Baker, Karthik Anantharaman, Christopher T Brown, Alexander J Probst, Cindy J Castelle, Cristina N Butterfield, Alex W Hernsdorf, Yuki Amano, Kotaro Ise

Nat Microbiol· April 2016

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Conserved environmental adaptations of stream microbiomes in the hyporheic zone across North America.
Tom L Stach, Jörn Starke, Feriel Bouderka, Till L V Bornemann, André R Soares, Alexander J Probst

Microbiome· December 2025

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Author Correction: A roadmap for equitable reuse of public microbiome data.
Laura A Hug, Roland Hatzenpichler, Cristina Moraru, André R Soares, Folker Meyer, Alexander J Probst

Nat Microbiol· November 2025

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A roadmap for equitable reuse of public microbiome data.
Laura A Hug, Roland Hatzenpichler, Cristina Moraru, André R Soares, Folker Meyer, Alexander J Probst

Nat Microbiol· October 2025

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Planning Considerations Related to Contamination Control for the Return and Analysis of Martian Samples.
Alex L Sessions, Cara Magnabosco, Hazel A Barton, Christoph Burkhardt, Jason P Dworkin, Alexander J Probst

Astrobiology· October 2025

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Acquisition of Spacers from Foreign Prokaryotic Genomes by CRISPR-Cas Systems in Natural Environments.
Katharina Sures, Sarah P Esser, Till L V Bornemann, Carrie J Moore, André R Soares, Alexander J Probst

Genome Biol Evol· October 2025

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Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication.
Gareth Trubl, Alexander J Probst

Environ Microbiol· September 2025

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NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling.
Friederike Hanssen, Gisela Gabernet, Famke Bäuerle, Bianca Stöcker, Felix Wiegand, Alexander J Probst

F1000Res· July 2025

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Integrative Analysis of Nontargeted LC-HRMS and High-Throughput Metabarcoding Data for Aquatic Environmental Studies Using Combined Multivariate Statistical Approaches.
Maryam Vosough, Felix Drees, Guido Sieber, Tom L Stach, Daniela Beisser, Alexander J Probst

Anal Chem· June 2025

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Differential Expression of Core Metabolic Functions in Candidatus Altiarchaeum Inhabiting Distinct Subsurface Ecosystems.
Sarah P Esser, Victoria Turzynski, Julia Plewka, Julia Nuy, Carrie J Moore, Alexander J Probst

Environ Microbiol Rep· June 2025

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Earth's most needed uncultivated aquatic prokaryotes.
Sophie A Simon, Vera Aschmann, Annika Behrendt, Michael Hügler, Lisa M Engl, Alexander J Probst

Water Res· April 2025

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A metatranscriptomic exploration of fungal and bacterial contributions to allochthonous leaf litter decomposition in the streambed.
Aman Deep, Guido Sieber, Lisa Boden, Gwendoline M David, Daria Baikova, Alexander J Probst

PeerJ· April 2025

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Metagenomic analysis of pristine oil sheds new light on the global distribution of microbial genetic repertoire in hydrocarbon-associated ecosystems.
Julia Plewka, Armando Alibrandi, Till L V Bornemann, Sarah P Esser, Tom L Stach, Alexander J Probst

Microlife· January 2025

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Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing.
Sophie A Simon, André R Soares, Till L V Bornemann, Adrian Lange, Lea Griesdorn, Alexander J Probst

ISME Commun· January 2025

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Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content.
Anne Ostrzinski, Benoit J Kunath, André Rodrigues Soares, Cédric C Laczny, Rashi Halder, Alexander J Probst

ISME Commun· January 2025

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A global comparison of surface and subsurface microbiomes reveals large-scale biodiversity gradients, and a marine-terrestrial divide.
S Emil Ruff, Isabella Hrabe de Angelis, Megan Mullis, Jérôme P Payet, Cara Magnabosco, Alexander J Probst

Sci Adv· December 2024

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Metaproteogenomics resolution of a high-CO aquifer community reveals a complex cellular adaptation of groundwater Gracilibacteria to a host-dependent lifestyle.
Perla Abigail Figueroa-Gonzalez, Till L V Bornemann, Tjorven Hinzke, Sandra Maaß, Anke Trautwein-Schult, Alexander J Probst

Microbiome· October 2024

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Stable-isotope probing combined with amplicon sequencing and metagenomics identifies key bacterial benzene degraders under microaerobic conditions.
András Táncsics, Anna Bedics, Sinchan Banerjee, André Soares, Erzsébet Baka, Alexander J Probst

Biol Futur· September 2024

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Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments.
María Ángeles Lezcano, Till L V Bornemann, Laura Sánchez-García, Daniel Carrizo, Panagiotis S Adam, Alexander J Probst

Microbiome· September 2024

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Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities.
Sabrina Ninck, Thomas Klaus, Tatiana V Kochetkova, Sarah P Esser, Leonard Sewald, Alexander J Probst

Environ Microbiome· June 2024

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Genome-resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.
Manan Shah, Till L V Bornemann, Julia K Nuy, Martin W Hahn, Alexander J Probst

Environ Microbiol· June 2024

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MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data.
Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, Alexander J Probst

Nat Microbiol· May 2024

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Time-series metaproteogenomics of a high-CO aquifer reveals active viruses with fluctuating abundances and broad host ranges.
Carrie Julia Moore, Till L V Bornemann, Perla Abigail Figueroa-Gonzalez, Sarah P Esser, Cristina Moraru, Alexander J Probst

Microlife· May 2024

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The journey to understand previously unknown microbial genes.
Jakob Wirbel, Ami S Bhatt, Alexander J Probst

Nature· February 2024

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Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism.
Luis E Valentin-Alvarado, Sirine C Fakra, Alexander J Probst, Jonathan R Giska, Alexander L Jaffe

Microbiome· January 2024

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Functional prediction of proteins from the human gut archaeome.
Polina V Novikova, Susheel Bhanu Busi, Alexander J Probst, Patrick May, Paul Wilmes

ISME Commun· January 2024

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