Publications by authors named "Alexandra Calteau"

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A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.
Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga

Microb Biotechnol· June 2023

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Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform.
David Roche, Alexandra Calteau, David Vallenet

Methods Mol Biol· December 2022

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Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Alexandra Calteau

PLoS Comput Biol· December 2021

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From Strain Characterization to Field Authorization: Highlights on Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi.
Pierre Joly, Alexandra Calteau, Aurélie Wauquier, Rémi Dumas, Mylène Beuvin

Microorganisms· September 2021

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A community resource for paired genomic and metabolomic data mining.
Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexandra Calteau

Nat Chem Biol· April 2021

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panRGP: a pangenome-based method to predict genomic islands and explore their diversity.
Adelme Bazin, Guillaume Gautreau, Claudine Médigue, David Vallenet, Alexandra Calteau

Bioinformatics· December 2020

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Alexandra Calteau

PLoS Comput Biol· March 2020

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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
David Vallenet, Alexandra Calteau, Mathieu Dubois, Paul Amours, Adelme Bazin

Nucleic Acids Res· January 2020

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Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria.
Meng Li, Alexandra Calteau, Dmitry A Semchonok, Thomas A Witt, Jonathan T Nguyen

Nat Plants· December 2019

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MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Guillaume Gautreau

Brief Bioinform· July 2019

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A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle.
Frédéric Partensky, Christophe Six, Morgane Ratin, Laurence Garczarek, Daniel Vaulot, Alexandra Calteau

Sci Rep· June 2018

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Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium.
Florent Lassalle, Rémi Planel, Simon Penel, David Chapulliot, Valérie Barbe, Alexandra Calteau

Genome Biol Evol· December 2017

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Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Elizabeth Ficko-Blean, Aurélie Préchoux, François Thomas, Tatiana Rochat, Robert Larocque, Alexandra Calteau

Nat Commun· November 2017

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Genomic Characterization of Serotypes and Development of a Multiplex PCR-Based Serotyping Scheme.
Tatiana Rochat, Erina Fujiwara-Nagata, Ségolène Calvez, Inger Dalsgaard, Lone Madsen, Alexandra Calteau

Front Microbiol· September 2017

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Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927.
Claire Pancrace, Jouni Jokela, Nathalie Sassoon, Christelle Ganneau, Marie Desnos-Ollivier, Alexandra Calteau

ACS Chem Biol· July 2017

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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
David Vallenet, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Aurélie Lajus

Nucleic Acids Res· January 2017

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Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains.
Claire Pancrace, Marie-Anne Barny, Reiko Ueoka, Alexandra Calteau, Thibault Scalvenzi

Sci Rep· January 2017

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A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters.
David Goudenège, Marie Agnès Travers, Astrid Lemire, Bruno Petton, Philippe Haffner, Alexandra Calteau

Environ Microbiol· November 2015

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Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters.
Astrid Lemire, David Goudenège, Typhaine Versigny, Bruno Petton, Alexandra Calteau

ISME J· July 2015

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Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria.
Alexandra Calteau, David P Fewer, Amel Latifi, Thérèse Coursin, Thierry Laurent

BMC Genomics· November 2014

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A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa.
Jean-François Humbert, Valérie Barbe, Amel Latifi, Muriel Gugger, Alexandra Calteau

PLoS One· March 2014

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Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.
David Goudenège, Yannick Labreuche, Evelyne Krin, Dominique Ansquer, Sophie Mangenot, Alexandra Calteau

ISME J· October 2013

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Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides.
Niina Leikoski, Liwei Liu, Jouni Jokela, Matti Wahlsten, Muriel Gugger, Alexandra Calteau

Chem Biol· August 2013

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MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
David Vallenet, Eugeni Belda, Alexandra Calteau, Stéphane Cruveiller, Stefan Engelen

Nucleic Acids Res· January 2013

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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.
Patrick M Shih, Dongying Wu, Amel Latifi, Seth D Axen, David P Fewer, Alexandra Calteau

Proc Natl Acad Sci U S A· January 2013

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