Publications by authors named "Amy Pickering"

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Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children.
Maya L Nadimpalli, Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H Gilman, Ashlee M Earl, Amy J Pickering

Gut Microbes· December 2025

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Effects of commonly used antibiotics on children's developing gut microbiomes and resistomes in peri-urban Lima, Peru.
Neha Sehgal, Monica J Pajuelo, Robert H Gilman, Amy J Pickering, Ashlee M Earl

J Antimicrob Chemother· December 2025

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Examining the effect of neighborhood sanitation coverage on childhood diarrheal disease in rural Bangladesh.
Hannah Van Wyk, Andrew F Brouwer, Jesse Contreras, Mahbubur Rahman, Mahfuza Islam, Amy J Pickering

Int J Hyg Environ Health· December 2025

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Rainfall and temperature influence effectiveness of on-site sanitation intervention against E. coli contamination in Bangladeshi households.
Caitlin G Niven, Mahfuza Islam, Anna Nguyen, Andrew Mertens, Amy J Pickering

Int J Hyg Environ Health· December 2025

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Biomarkers of environmental enteric dysfunction and neurodevelopmental outcomes among children in rural Bangladesh and Kenya: a prospective cohort study.
Gene G Ho, Beryl S Achando, Shahjahan Ali, Caitlin Hemlock, Helen O Pitchik, Amy J Pickering

Am J Clin Nutr· August 2025

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Solid Evidence and Liquid Gold: Trade-Offs of Processing Settled Solids, Whole Influent, or Centrifuged Influent for Codetecting Viral, Bacterial, and Eukaryotic Pathogens in Wastewater.
Sooyeol Kim, Denise Garcia, Caroline McCormack, Rui Xin Tham, Megan E O'Brien, Amy J Pickering

Environ Sci Technol· August 2025

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Associations between floor material and E. coli contamination in rural Bangladeshi households.
Sumaiya Tazin, Mahfuza Islam, Amy J Pickering, Laura H Kwong, Andrew Mertens

Int J Hyg Environ Health· August 2025

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A single transcriptional regulator is crucial for the adaptation of to diverse niches.
Claus Vogl, Lynette C Mikula, Helene Marbach, Katharina Mayer-Weihrauch, Sebastian Herndler, Amy C Pickering

bioRxiv· August 2025

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Zoonotic and Environmental Sources of Infant Enteric Pathogen Infections Identified with Longitudinal Sampling.
Abigail P Paulos, John Mboya, Jeremy Lowe, Daehyun Daniel Kim, Hannah C Wharton, Amy J Pickering

Environ Sci Technol· July 2025

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Context-Seq: CRISPR-Cas9 targeted nanopore sequencing for transmission dynamics of antimicrobial resistance.
Erica R Fuhrmeister, Sooyeol Kim, Shruteek A Mairal, Caroline McCormack, Benard Chieng, Amy J Pickering

Nat Commun· July 2025

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Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children.
Maya L Nadimpalli, Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H Gilman, Ashlee M Earl, Amy J Pickering

medRxiv· July 2025

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Context-Seq: CRISPR-Cas9 Targeted Nanopore Sequencing for Transmission Dynamics of Antimicrobial Resistance.
Erica R Fuhrmeister, Sooyeol Kim, Shruteek A Mairal, Caroline McCormack, Benard Chieng, Amy J Pickering

bioRxiv· May 2025

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Contaminated drinking water facilitates Escherichia coli strain-sharing within households in urban informal settlements.
Daehyun D Kim, Jenna M Swarthout, Colin J Worby, Benard Chieng, John Mboya, Amy J Pickering

Nat Microbiol· May 2025

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Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform.
Dan Lu, Katrina L Kalantar, Abigail L Glascock, Victoria T Chu, Estella S Guerrero, Amy J Pickering

Genome Med· May 2025

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Associations between floor material and contamination in rural Bangladeshi households.
Sumaiya Tazin, Mahfuza Islam, Amy J Pickering, Laura H Kwong, Andrew Mertens

bioRxiv· May 2025

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Temperature and precipitation affect the water fetching time burden in Sub-Saharan Africa.
Abigail Harvey Paulos, David A Carroll, Julie Powers, Jake Campolo, Daehyun Daniel Kim, Amy J Pickering

Nat Commun· April 2025

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Wastewater surveillance reveals patterns of antibiotic resistance across the United States.
Sooyeol Kim, Alessandro Zulli, Elana M G Chan, Dorothea Duong, Rebecca Y Linfield, Amy J Pickering

medRxiv· April 2025

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Social Desirability Bias in a Randomized Controlled Trial That Included Breastfeeding Promotion in Western Kenya.
Christine P Stewart, Charles D Arnold, Anne M Williams, Benjamin F Arnold, Amy J Pickering

Curr Dev Nutr· February 2025

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Water, sanitation, handwashing, and nutritional interventions can reduce child antibiotic use: evidence from Bangladesh and Kenya.
Ayse Ercumen, Andrew N Mertens, Zachary Butzin-Dozier, Da Kyung Jung, Shahjahan Ali, Amy J Pickering

Nat Commun· January 2025

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Associations between weather extremes and faecal contamination along pathogen transmission pathways in rural Bangladeshi households: a prospective observational study.
Caitlin G Niven, Mahfuza Islam, Anna Nguyen, Jessica A Grembi, Andrew Mertens, Amy J Pickering

Lancet Planet Health· January 2025

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Environmental surveillance of soil-transmitted helminths and other enteric pathogens in settings without networked wastewater infrastructure: Environmental surveillance for STH and other enteric pathogens.
Joël Edoux Eric Siko, Kendra Joy Dahmer, Zayina Zondervenni Manoharan, Ajithkumar Muthukumar, Heather K Amato, Amy J Pickering

PLOS Water· January 2025

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Enteric Pathogens in Humans, Domesticated Animals, and Drinking Water in a Low-Income Urban Area of Nairobi, Kenya.
Sean W Daly, Benard Chieng, Sylvie Araka, John Mboya, Christine Imali, Amy J Pickering

Environ Sci Technol· December 2024

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Understanding the Effectiveness of Water, Sanitation, and Hygiene Interventions: A Counterfactual Simulation Approach to Generalizing the Outcomes of Intervention Trials.
Andrew F Brouwer, Mondal H Zahid, Marisa C Eisenberg, Benjamin F Arnold, Sania Ashraf, Amy J Pickering

Environ Health Perspect· December 2024

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Effects of commonly used antibiotics on children's developing gut microbiomes and resistomes in peri-urban Lima, Peru.
Neha Sehgal, Monica J Pajuelo, Robert H Gilman, Amy J Pickering, Ashlee M Earl

medRxiv· December 2024

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Moving beyond Wastewater: Perspectives on Environmental Surveillance of Infectious Diseases for Public Health Action in Low-Resource Settings.
Jeseth Delgado Vela, Sarah E Philo, Joe Brown, Mami Taniuchi, Molly Cantrell, Amy J Pickering

Environ Health (Wash)· October 2024

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