Publications by authors named "Andrew Jaffe"

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Stimulation of Locus Ceruleus Inputs to the Prelimbic Cortex in Mice Induces Cell Type-Specific Expression of the Gene.
Genevieve E Craig, Lizbeth Ramos, Samuel R Essig, Nicholas J Eagles, Andrew E Jaffe

eNeuro· December 2024

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Molecular impact of nicotine and smoking exposure on the developing and adult mouse brain.
Daianna Gonzalez-Padilla, Nicholas J Eagles, Marisol Cano, Geo Pertea, Andrew E Jaffe

bioRxiv· November 2024

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Smoking-informed methylation and expression QTLs in human brain and colocalization with smoking-associated genetic loci.
Megan Ulmer Carnes, Bryan C Quach, Linran Zhou, Shizhong Han, Ran Tao, Andrew E Jaffe

Neuropsychopharmacology· October 2024

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Stimulation of locus coeruleus inputs to the frontal cortex in mice induces cell type-specific expression of the gene.
Genevieve E Craig, Lizbeth Ramos, Samuel R Essig, Nicholas J Eagles, Andrew E Jaffe

bioRxiv· July 2024

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Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry.
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Andrew E Jaffe

Nat Neurosci· June 2024

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Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain.
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Andrew E Jaffe

Science· May 2024

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TCF4 Mutations Disrupt Synaptic Function Through Dysregulation of RIMBP2 in Patient-Derived Cortical Neurons.
Brittany A Davis, Huei-Ying Chen, Zengyou Ye, Isaac Ostlund, Madhavi Tippani, Andrew E Jaffe

Biol Psychiatry· April 2024

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Promise of Future Searches for Cosmic Topology.
Yashar Akrami, Stefano Anselmi, Craig J Copi, Johannes R Eskilt, Andrew H Jaffe

Phys Rev Lett· April 2024

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TrkB-dependent regulation of molecular signaling across septal cell types.
Lionel A Rodriguez, Matthew Nguyen Tran, Renee Garcia-Flores, Seyun Oh, Robert A Phillips, Andrew E Jaffe

Transl Psychiatry· January 2024

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: Processing utilities for high-resolution images for spatially resolved transcriptomics data.
Madhavi Tippani, Heena R Divecha, Joseph L Catallini, Sang H Kwon, Lukas M Weber, Andrew E Jaffe

Biol Imaging· November 2023

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Genetic and environmental contributions to ancestry differences in gene expression in the human brain.
Kynon J M Benjamin, Qiang Chen, Nicholas J Eagles, Louise A Huuki-Myers, Leonardo Collado-Torres, Andrew E Jaffe

bioRxiv· October 2023

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BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.
Nicholas J Eagles, Richard Wilton, Andrew E Jaffe, Leonardo Collado-Torres

BMC Bioinformatics· September 2023

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Smoking-informed methylation and expression QTLs in human brain and colocalization with smoking-associated genetic loci.
Megan Ulmer Carnes, Bryan C Quach, Linran Zhou, Shizhong Han, Ran Tao, Andrew E Jaffe

medRxiv· September 2023

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TrkB-dependent regulation of molecular signaling across septal cell types.
Lionel A Rodriguez, Matthew Nguyen Tran, Renee Garcia-Flores, Elizabeth A Pattie, Heena R Divecha, Andrew E Jaffe

bioRxiv· July 2023

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Hypermetabolism in mice carrying a near-complete human chromosome 21.
Dylan C Sarver, Cheng Xu, Susana Rodriguez, Susan Aja, Andrew E Jaffe

Elife· May 2023

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Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex.
Natalie Matosin, Janine Arloth, Darina Czamara, Katrina Z Edmond, Malosree Maitra, Andrew E Jaffe

Acta Neuropathol· April 2023

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Cross-ancestry, cell-type-informed atlas of gene, isoform, and splicing regulation in the developing human brain.
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Andrew E Jaffe

medRxiv· March 2023

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Dysregulated systemic metabolism in a Down syndrome mouse model.
Dylan C Sarver, Cheng Xu, Leandro M Velez, Susan Aja, Andrew E Jaffe

Mol Metab· February 2023

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Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing.
Fang Chen, Xingyan Wang, Seon-Kyeong Jang, Bryan C Quach, J Dylan Weissenkampen, Andrew E Jaffe

Nat Genet· February 2023

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SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues.
Vijay Sadashivaiah, Madhavi Tippani, Stephanie C Page, Sang Ho Kwon, Svitlana V Bach, Andrew E Jaffe

BMC Neurosci· January 2023

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TCF4 mutations disrupt synaptic function through dysregulation of RIMBP2 in patient-derived cortical neurons.
Brittany A Davis, Huei-Ying Chen, Zengyou Ye, Isaac Ostlund, Madhavi Tippani, Andrew E Jaffe

bioRxiv· January 2023

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Hypermetabolism in mice carrying a near complete human chromosome 21.
Dylan C Sarver, Cheng Xu, Susana Rodriguez, Susan Aja, Andrew E Jaffe

bioRxiv· January 2023

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CaPTure: Calcium PeakToolbox for analysis of in vitro calcium imaging data.
Madhavi Tippani, Elizabeth A Pattie, Brittany A Davis, Claudia V Nguyen, Yanhong Wang, Andrew E Jaffe

BMC Neurosci· November 2022

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Differential expression of in the dorsolateral prefrontal cortex following opioid overdose.
David W Sosnowski, Andrew E Jaffe, Ran Tao, Amy Deep-Soboslay, Chang Shu

Drug Alcohol Depend Rep· June 2022

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