Publications by authors named "Audrey Gasch"

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Chromosome duplication causes premature aging via defects in ribosome quality control.
Leah E Escalante, James Hose, Jamie M Ahrens, Hollis Howe, Norah Paulsen, Audrey P Gasch

PLoS Biol· November 2025

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Inferring fungal cis-regulatory networks from genome sequences via unsupervised and interpretable representation learning.
Alan M Moses, Jason E Stajich, Audrey P Gasch, David A Knowles

Genetics· September 2025

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Intrinsic Gene Expression Correlates of the Biophysically Modeled Diffusion Magnetic Resonance Imaging Signal.
Ajay P Singh, Michael Fromandi, Daniel Pimentel-Alarcón, Donna M Werling, Audrey P Gasch

Biol Psychiatry Glob Open Sci· March 2025

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On the rate of aneuploidy reversion in a wild yeast model.
James Hose, Qi Zheng, Nathaniel P Sharp, Audrey P Gasch

Genetics· February 2025

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Investigating the role of RNA-binding protein Ssd1 in aneuploidy tolerance through network analysis.
H Auguste Dutcher, Audrey P Gasch

RNA· December 2024

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Regulated resource reallocation is transcriptionally hard wired into the yeast stress response.
Rachel A Kocik, Audrey P Gasch

bioRxiv· December 2024

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Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model.
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Audrey P Gasch

Cell Genom· October 2024

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The response to single-gene duplication implicates translation as a key vulnerability in aneuploid yeast.
H Auguste Dutcher, James Hose, Hollis Howe, Julie Rojas, Audrey P Gasch

PLoS Genet· October 2024

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Auto-MuRCiS: a streamlined software package for analysis of multiplex, randomized CRISPR interference sequencing data.
Kevin S Myers, Michael Place, Audrey P Gasch, Daniel R Noguera, Timothy J Donohue

Microbiol Resour Announc· September 2024

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Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer.
Noah M Lancaster, Pavel Sinitcyn, Patrick Forny, Trenton M Peters-Clarke, Caroline Fecher, Audrey P Gasch

Nat Commun· August 2024

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Investigating the role of RNA-binding protein Ssd1 in aneuploidy tolerance through network analysis.
H Auguste Dutcher, Audrey P Gasch

bioRxiv· July 2024

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Premature aging in aneuploid yeast is caused in part by aneuploidy-induced defects in Ribosome Quality Control.
Leah E Escalante, James Hose, Hollis Howe, Norah Paulsen, Michael Place, Audrey P Gasch

bioRxiv· June 2024

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Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass Spectrometer.
Noah M Lancaster, Pavel Sinitcyn, Patrick Forny, Trenton M Peters-Clarke, Caroline Fecher, Audrey P Gasch

bioRxiv· May 2024

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Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model.
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Audrey P Gasch

bioRxiv· April 2024

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The response to single-gene duplication implicates translation as a key vulnerability in aneuploid yeast.
H Auguste Dutcher, James Hose, Hollis Howe, Julie Rojas, Audrey P Gasch

bioRxiv· April 2024

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Integrative annotation scores of variants for impact on RNA binding protein activities.
Jingqi Duan, Audrey P Gasch, Sündüz Keleş

Bioinformatics· March 2024

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The IV International Symposium on Fungal Stress and the XIII International Fungal Biology Conference.
Alene Alder-Rangel, Alexandre Melo Bailão, Alfredo Herrera-Estrella, Amanda E A Rangel, Attila Gácser, Audrey P Gasch

Fungal Biol· November 2023

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Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast.
DeElegant Robinson, Elena Vanacloig-Pedros, Ruoyi Cai, Michael Place, James Hose, Audrey P Gasch

G3 (Bethesda)· September 2023

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PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae.
Ellen R Wagner, Nicole M Nightingale, Annie Jen, Katherine A Overmyer, Mick McGee, Audrey P Gasch

PLoS Genet· July 2023

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Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast.
DeElegant Robinson, Elena Vanacloig-Pedros, Ruoyi Cai, Michael Place, James Hose, Audrey P Gasch

bioRxiv· July 2023

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Advances in Engineering for Xylose Fermentation and Biofuel Production: Balancing Growth, Metabolism, and Defense.
Ellen R Wagner, Audrey P Gasch

J Fungi (Basel)· July 2023

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Modeling single-cell phenotypes links yeast stress acclimation to transcriptional repression and pre-stress cellular states.
Andrew C Bergen, Rachel A Kocik, James Hose, Megan N McClean, Audrey P Gasch

Elife· November 2022

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Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions.
Elena Vanacloig-Pedros, Kaitlin J Fisher, Lisa Liu, Derek J Debrauske, Megan K M Young, Audrey P Gasch

FEMS Yeast Res· September 2022

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Comparative functional genomics identifies an iron-limited bottleneck in a strain with a cytosolic-localized isobutanol pathway.
Francesca V Gambacorta, Ellen R Wagner, Tyler B Jacobson, Mary Tremaine, Laura K Muehlbauer, Audrey P Gasch

Synth Syst Biotechnol· June 2022

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Breadth and Specificity in Pleiotropic Protein Kinase A Activity and Environmental Responses.
Rachel A Kocik, Audrey P Gasch

Front Cell Dev Biol· February 2022

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