Publications by authors named "Baochen Shi"

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The balance of metagenomic elements shapes the skin microbiome in acne and health.
Emma Barnard, Baochen Shi, Dezhi Kang, Noah Craft, Huiying Li

Sci Rep· December 2016

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Vitamin B12 modulates the transcriptome of the skin microbiota in acne pathogenesis.
Dezhi Kang, Baochen Shi, Marie C Erfe, Noah Craft, Huiying Li

June 2015

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The Effect of Oral Care Product Ingredients on Oral Pathogenic Bacteria Transcriptomics Through RNA-Seq.
Ping Hu, Sancai Xie, Baochen Shi, Cheryl S Tansky, Benjamin Circello

Microorganisms· December 2024

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The use of Escherichia coli strain Nissle 1917 shows promise for improving gastrointestinal and urinary health in dogs.
Adam J Rudinsky, Alistair Harrison, Baochen Shi, Rachael Hardison, Tracy Prinster

Am J Vet Res· August 2023

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The impact of fixed orthodontic appliances and clear aligners on the oral microbiome and the association with clinical parameters: A longitudinal comparative study.
Bhumika Shokeen, Edward Viloria, Emily Duong, Masooma Rizvi, Guiselle Murillo, Baochen Shi

Am J Orthod Dentofacial Orthop· May 2022

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Cervical-Vaginal Microbiome and Associated Cytokine Profiles in a Prospective Study of HPV 16 Acquisition, Persistence, and Clearance.
Anna-Barbara Moscicki, Baochen Shi, Hazel Huang, Emma Barnard, Huiying Li

Front Cell Infect Microbiol· June 2021

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GLUT1 overexpression enhances glucose metabolism and promotes neonatal heart regeneration.
Viviana M Fajardo, Iris Feng, Bao Ying Chen, Cesar A Perez-Ramirez, Baochen Shi, Atsushi Nakano

Sci Rep· April 2021

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Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.
Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang

Cell· October 2020

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MG-MLST: Characterizing the Microbiome at the Strain Level in Metagenomic Data.
Nathanael J Bangayan, Baochen Shi, Jerry Trinh, Emma Barnard, Gabriela Kasimatis

Microorganisms· May 2020

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Author Correction: The balance of metagenomic elements shapes the skin microbiome in acne and health.
Emma Barnard, Baochen Shi, Dezhi Kang, Noah Craft, Huiying Li

Sci Rep· April 2020

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The subgingival microbiome associated with periodontitis in type 2 diabetes mellitus.
Baochen Shi, Renate Lux, Perry Klokkevold, Michaela Chang, Emma Barnard

ISME J· February 2020

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Methicillin-Resistant Staphylococcus aureus Colonization Is Associated with Decreased Skin Commensal Bacteria in Atopic Dermatitis.
Baochen Shi, Donald Y M Leung, Patricia A Taylor, Huiying Li

J Invest Dermatol· July 2018

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Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.
Lucy Cheng, Laura J Marinelli, Noël Grosset, Sorel T Fitz-Gibbon, Charles A Bowman, Baochen Shi

BMC Microbiol· March 2018

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The Denture-Associated Oral Microbiome in Health and Stomatitis.
Baochen Shi, Tingxi Wu, Jeffrey McLean, Anna Edlund, Youngik Young, Wenyuan Shi

mSphere· December 2016

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The skin microbiome is different in pediatric versus adult atopic dermatitis.
Baochen Shi, Nathanael J Bangayan, Emily Curd, Patricia A Taylor, Richard L Gallo

J Allergy Clin Immunol· October 2016

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Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.
Baochen Shi, Michaela Chang, John Martin, Makedonka Mitreva, Renate Lux

mBio· February 2015

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Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.
Baochen Shi, Xiangqian Guo, Tao Wu, Sitong Sheng, Jie Wang

BMC Genomics· February 2009

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Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.
Housheng He, Jie Wang, Tao Liu, X Shirley Liu, Tiantian Li, Baochen Shi

Genome Res· October 2007

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Integrated analysis of multiple data sources reveals modular structure of biological networks.
Hongchao Lu, Baochen Shi, Gaowei Wu, Yong Zhang, Xiaopeng Zhu

Biochem Biophys Res Commun· June 2006

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Genome-wide analysis of mammalian DNA segment fusion/fission.
Zhihua Zhang, Hong Sun, Yong Zhang, Yi Zhao, Baochen Shi, Shiwei Sun

J Theor Biol· May 2006

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Identifying Hfq-binding small RNA targets in Escherichia coli.
Yong Zhang, Shiwei Sun, Tao Wu, Jie Wang, Changning Liu, Baochen Shi

Biochem Biophys Res Commun· May 2006

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Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Shiwei Sun, Baochen Shi

BMC Bioinformatics· May 2006

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Dynamic changes in subgraph preference profiles of crucial transcription factors.
Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Baochen Shi

PLoS Comput Biol· May 2006

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NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.
Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi

Nucleic Acids Res· January 2006

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Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence.
Wei Deng, Baochen Shi, Xiaoli He, Zhihua Zhang, Jun Xu

J Hum Genet· August 2004

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