Publications by authors named "Brian D Ondov"

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Mash: fast genome and metagenome distance estimation using MinHash.
Brian D Ondov, Todd J Treangen, Páll Melsted, Adam B Mallonee, Nicholas H Bergman, Sergey Koren, Adam M Phillippy

June 2016

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Revealing Perceptual Proxies with Adversarial Examples.
Brian D Ondov, Fumeng Yang, Matthew Kay, Niklas Elmqvist, Steven Franconeri

IEEE Trans Vis Comput Graph· February 2021

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The Perceptual Proxies of Visual Comparison.
Nicole Jardine, Brian D Ondov, Niklas Elmqvist, Steven Franconeri

IEEE Trans Vis Comput Graph· January 2020

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Mash Screen: high-throughput sequence containment estimation for genome discovery.
Brian D Ondov, Gabriel J Starrett, Anna Sappington, Aleksandra Kostic, Sergey Koren

Genome Biol· November 2019

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Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
Jacquelyn S Meisel, Daniel J Nasko, Brian Brubach, Victoria Cepeda-Espinoza, Jessica Chopyk, Brian D Ondov

Microbiome· November 2018

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BLAST-based validation of metagenomic sequence assignments.
Adam L Bazinet, Brian D Ondov, Daniel D Sommer, Shashikala Ratnayake

PeerJ· May 2018

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The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Todd J Treangen, Brian D Ondov, Sergey Koren, Adam M Phillippy

Genome Biol· July 2015

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Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis.
Karla D Passalacqua, Anjana Varadarajan, Charlotte Weist, Brian D Ondov, Benjamin Byrd

PLoS One· April 2013

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Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis.
Robin Harrington, Brian D Ondov, Diana Radune, Mary Beth Friss, Joy Klubnik

Genome Announc· January 2013

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Interactive metagenomic visualization in a Web browser.
Brian D Ondov, Nicholas H Bergman, Adam M Phillippy

BMC Bioinformatics· September 2011

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An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.
Brian D Ondov, Charles Cochran, Mark Landers, Gavin D Meredith, Miroslav Dudas

Bioinformatics· August 2010

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Structure and complexity of a bacterial transcriptome.
Karla D Passalacqua, Anjana Varadarajan, Brian D Ondov, David T Okou, Michael E Zwick

J Bacteriol· May 2009

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Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.
Brian D Ondov, Anjana Varadarajan, Karla D Passalacqua, Nicholas H Bergman

Bioinformatics· December 2008

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