Publications by authors named "Brook Nunn"

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Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics.
Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Brook L Nunn

Nat Commun· November 2025

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Mechanisms underlying thermally induced growth plasticity in juvenile Pacific halibut.
Josep V Planas, Andrew J Jasonowicz, Anna Simeon, Crystal Simchick, Emma Timmins-Schiffman, Brook L Nunn

J Exp Biol· October 2025

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Carafe enables high quality spectral library generation for data-independent acquisition proteomics.
Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Brook L Nunn

bioRxiv· August 2025

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Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome.
Miranda C Mudge, Michael Riffle, Gabriella Chebli, Deanna L Plubell, Tatiana A Rynearson, Brook L Nunn

Nat Commun· April 2025

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An In-Depth Coho Salmon (Oncorhynchus kisutch) Ovarian Follicle Proteome Reveals Coordinated Changes Across Diverse Cellular Processes during the Transition From Primary to Secondary Growth.
Emma Timmins-Schiffman, Jennifer Telish, Chelsea Field, Chris Monson, José M Guzmán, Brook L Nunn

Proteomics· March 2025

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Proteomic Insights into Psychrophile Growth in Perchlorate-Amended Subzero Conditions: Implications for Martian Life Detection.
Anais S Gentilhomme, Kusum Dhakar, Emma Timmins-Schiffman, Matthew Chaw, Erin Firth, Brook L Nunn

Astrobiology· March 2025

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Proteomic Plasticity in the Coral Gamete Bundles after Parent Thermal Bleaching.
Emma B Timmins-Schiffman, Rayhan Khanna, Tanya Brown, Jenna Dilworth, Brendan X MacLean, Brook L Nunn

J Proteome Res· March 2025

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Hydrocarbon metabolism and petroleum seepage as ecological and evolutionary drivers for Cycloclasticus.
Eleanor C Arrington, Jonathan Tarn, Veronika Kivenson, Brook L Nunn, Rachel M Liu

ISME J· January 2025

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Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Tasman A Nunn

Sci Data· January 2025

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Metabolic Responses, Cell Recoverability, and Protein Signatures of Three Extremophiles: Sustained Life During Long-Term Subzero Incubations.
Marcela Ewert, Brook L Nunn, Erin Firth, Karen Junge

Microorganisms· January 2025

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Time course transcriptomic profiling suggests Crp/Fnr transcriptional regulation of gene in a NO-reducing thermophile.
Jiro Tsuchiya, Sayaka Mino, Fuki Fujiwara, Nao Okuma, Yasunori Ichihashi, Brook L Nunn

iScience· November 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Tasman A Nunn

Sci Data· November 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna Plubell, Gabriella Chebli, Tasman A Nunn

bioRxiv· September 2024

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Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod.
Emma Timmins-Schiffman, Amy E Maas, Rayhan Khanna, Leocadio Blanco-Bercial, Eric Huang, Brook L Nunn

J Proteome Res· June 2024

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Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod.
Amy E Maas, Emma Timmins-Schiffman, Ann M Tarrant, Brook L Nunn, Jea Park

Mol Ecol· March 2024

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Subcellular proteomics for determining iron-limited remodeling of plastids in the model diatom Thalassiosira pseudonana (Bacillariophyta).
Kristofer M Gomes, Brook L Nunn, P Dreux Chappell, Bethany D Jenkins

J Phycol· October 2023

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Detection of Short Peptides as Putative Biosignatures of Psychrophiles via Laser Desorption Mass Spectrometry.
Ziqin Ni, Ricardo Arevalo, Anais Bardyn, Lori Willhite, Soumya Ray, Brook L Nunn

Astrobiology· June 2023

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The ongoing need for rates: can physiology and omics come together to co-design the measurements needed to understand complex ocean biogeochemistry?
Robert F Strzepek, Brook L Nunn, Lennart T Bach, John A Berges, Erica B Young

J Plankton Res· June 2022

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Microbial metabolism and adaptations in Atribacteria-dominated methane hydrate sediments.
Jennifer B Glass, Piyush Ranjan, Cecilia B Kretz, Brook L Nunn, Abigail M Johnson

Environ Microbiol· August 2021

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Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments.
Miranda C Mudge, Brook L Nunn, Erin Firth, Marcela Ewert, Kianna Hales

Environ Microbiol· July 2021

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Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality.
Scott B Pollara, Jamie W Becker, Brook L Nunn, Rene Boiteau, Daniel Repeta

mSphere· May 2021

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Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery.
Emma Timmins-Schiffman, Samuel J White, Rhonda Elliott Thompson, Brent Vadopalas, Benoit Eudeline, Brook L Nunn

Environ Microbiome· March 2021

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Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors.
Kaho H Tisthammer, Emma Timmins-Schiffman, Francois O Seneca, Brook L Nunn, Robert H Richmond

Sci Rep· February 2021

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Survey of metaproteomics software tools for functional microbiome analysis.
Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Brook L Nunn

PLoS One· December 2020

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Novel insights into the taxonomic diversity and molecular mechanisms of bacterial Mn(III) reduction.
Nadia Szeinbaum, Brook L Nunn, Amanda R Cavazos, Sean A Crowe, Frank J Stewart

Environ Microbiol Rep· October 2020

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