Publications by authors named "Craig Pikaard"

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A narrow range of transcript-error rates across the Tree of Life.
Weiyi Li, Stephan Baehr, Michelle Marasco, Lauren Reyes, Danielle Brister, Craig S Pikaard

Sci Adv· July 2025

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A Narrow Range of Transcript-error Rates Across the Tree of Life.
Weiyi Li, Stephan Baehr, Michelle Marasco, Lauren Reyes, Danielle Brister, Craig S Pikaard

bioRxiv· January 2025

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Sequence and epigenetic landscapes of active and silent nucleolus organizer regions in .
Dalen Fultz, Anastasia McKinlay, Ramya Enganti, Craig S Pikaard

Sci Adv· November 2023

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Reaching for the off switch in nucleolar dominance.
Craig S Pikaard, Chinmayi Chandrasekhara, Anastasia McKinlay, Ramya Enganti, Dalen Fultz

Plant J· September 2023

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Beyond transcription: compelling open questions in plant RNA biology.
Pablo A Manavella, Micaela A Godoy Herz, Alberto R Kornblihtt, Reed Sorenson, Leslie E Sieburth, Craig S Pikaard

Plant Cell· May 2023

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Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention.
Feng Wang, Hsiao-Yun Huang, Jie Huang, Jasleen Singh, Craig S Pikaard

Genes Dev· February 2023

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A DCL3 dicing code within Pol IV-RDR2 transcripts diversifies the siRNA pool guiding RNA-directed DNA methylation.
Andrew Loffer, Jasleen Singh, Akihito Fukudome, Vibhor Mishra, Feng Wang, Craig S Pikaard

Elife· January 2022

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Structure and RNA template requirements of RNA-DEPENDENT RNA POLYMERASE 2.
Akihito Fukudome, Jasleen Singh, Vibhor Mishra, Eswar Reddem, Francisco Martinez-Marquez, Craig S Pikaard

Proc Natl Acad Sci U S A· December 2021

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Targeted Enrichment of rRNA Gene Tandem Arrays for Ultra-Long Sequencing by Selective Restriction Endonuclease Digestion.
Anastasia McKinlay, Dalen Fultz, Feng Wang, Craig S Pikaard

Front Plant Sci· April 2021

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Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV.
Vibhor Mishra, Jasleen Singh, Feng Wang, Yixiang Zhang, Akihito Fukudome, Craig S Pikaard

Proc Natl Acad Sci U S A· March 2021

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Reconstitution of siRNA Biogenesis In Vitro: Novel Reaction Mechanisms and RNA Channeling in the RNA-Directed DNA Methylation Pathway.
Jasleen Singh, Craig S Pikaard

Cold Spring Harb Symp Quant Biol· April 2020

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The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation.
Jered M Wendte, Jeremy R Haag, Olga M Pontes, Jasleen Singh, Sara Metcalf, Craig S Pikaard

Nucleic Acids Res· September 2019

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The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis.
Laura Ferrafiat, David Pflieger, Jasleen Singh, Michael Thieme, Marcel Böhrer, Craig S Pikaard

Nucleic Acids Res· September 2019

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Analysis of siRNA Precursors Generated by RNA Polymerase IV and RNA-Dependent RNA Polymerase 2 in Arabidopsis.
Todd Blevins, Ram Podicheti, Craig S Pikaard

Methods Mol Biol· August 2019

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Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway.
Jasleen Singh, Vibhor Mishra, Feng Wang, Hsiao-Yun Huang, Craig S Pikaard

Mol Cell· August 2019

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Analysis of rRNA Gene Methylation in Arabidopsis thaliana by CHEF-Conventional 2D Gel Electrophoresis.
Gireesha Mohannath, Craig S Pikaard

Methods Mol Biol· January 2018

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Catalytic properties of RNA polymerases IV and V: accuracy, nucleotide incorporation and rNTP/dNTP discrimination.
Michelle Marasco, Weiyi Li, Michael Lynch, Craig S Pikaard

Nucleic Acids Res· November 2017

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Mutation of identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes.
Jing Wang, Todd Blevins, Ram Podicheti, Jeremy R Haag, Ek Han Tan, Craig S Pikaard

Genes Dev· August 2017

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Functional Dissection of the Pol V Largest Subunit CTD in RNA-Directed DNA Methylation.
Jered M Wendte, Jeremy R Haag, Jasleen Singh, Anastasia McKinlay, Olga M Pontes, Craig S Pikaard

Cell Rep· June 2017

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Hybrid incompatibility caused by an epiallele.
Todd Blevins, Jing Wang, David Pflieger, Frédéric Pontvianne, Craig S Pikaard

Proc Natl Acad Sci U S A· April 2017

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The RNAs of RNA-directed DNA methylation.
Jered M Wendte, Craig S Pikaard

Biochim Biophys Acta Gene Regul Mech· January 2017

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Targeting Argonaute to chromatin.
Jered M Wendte, Craig S Pikaard

Genes Dev· December 2016

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Selective nucleolus organizer inactivation in Arabidopsis is a chromosome position-effect phenomenon.
Gireesha Mohannath, Frederic Pontvianne, Craig S Pikaard

Proc Natl Acad Sci U S A· November 2016

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Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome.
Frédéric Pontvianne, Marie-Christine Carpentier, Nathalie Durut, Veronika Pavlištová, Karin Jaške, Craig S Pikaard

Cell Rep· August 2016

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Chromosome-specific NOR inactivation explains selective rRNA gene silencing and dosage control in Arabidopsis.
Chinmayi Chandrasekhara, Gireesha Mohannath, Todd Blevins, Frederic Pontvianne, Craig S Pikaard

Genes Dev· January 2016

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