Publications by authors named "D Knights"

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Metagenomic source tracking after microbiota transplant therapy.
Susan L Hoops, Daphne Moutsoglou, Byron P Vaughn, Alexander Khoruts, Dan Knights

Gut Microbes· December 2025

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Shared environments can facilitate microbial transmission and alter metabolic outcomes.
Isin Y Comba, Suzie Hoops, Lisa Till, P J Vangay, Stephen Johnson, Dan Knights

Gut Microbes· December 2025

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Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother's milk.
Pamela Ferretti, Mattea Allert, Kelsey E Johnson, Marco Rossi, Timothy Heisel, Dan Knights

Nat Commun· November 2025

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Mechanistic insights into microbiome-dependent and personalized responses to dietary fibre in a randomized controlled trial.
Anissa M Armet, Fuyong Li, Edward C Deehan, Daria D Nikolaeva, Omar Delannoy-Bruno, Dan Knights

medRxiv· November 2025

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Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches.
Timothy Heisel, Sara Gonia, Abrielle Dillon, Susan L Hoops, Gabriel A Al-Ghalith, Dan Knights

Front Microbiol· May 2025

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