Publications by authors named "David Pot"

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NCI Imaging Data Commons.
Andrey Fedorov, William J R Longabaugh, David Pot, David A Clunie, Steve Pieper, Hugo J W L Aerts, André Homeyer, Rob Lewis, Afshin Akbarzadeh, Dennis Bontempi

Cancer Res· August 2021

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Robust Cluster Prediction Across Data Types Validates Association of Sex and Therapy Response in GBM.
David L Gibbs, Gino Cioffi, Boris Aguilar, Kristin A Waite, Edward Pan, David Pot

Cancers (Basel)· January 2025

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Performance of phenomic selection in rice: Effects of population size and genotype-environment interactions on predictive ability.
Hugues de Verdal, Vincent Segura, David Pot, Niclolas Salas, Vincent Garin

PLoS One· December 2024

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An allometry perspective on crops.
Adrianus J Westgeest, François Vasseur, Brian J Enquist, Rubén Milla, Alicia Gómez-Fernández, David Pot

New Phytol· November 2024

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Linking genetic markers and crop model parameters using neural networks to enhance genomic prediction of integrative traits.
Florian Larue, Lauriane Rouan, David Pot, Jean-François Rami, Delphine Luquet

Front Plant Sci· July 2024

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NCI Cancer Research Data Commons: Cloud-Based Analytic Resources.
David Pot, Zelia Worman, Alexander Baumann, Shirish Pathak, Rowan Beck

Cancer Res· May 2024

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NCI Cancer Research Data Commons: Lessons Learned and Future State.
Erika Kim, Tanja Davidsen, Brandi N Davis-Dusenbery, Alexander Baumann, Angela Maggio, David Pot

Cancer Res· May 2024

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Characterization of adaptation mechanisms in sorghum using a multireference back-cross nested association mapping design and envirotyping.
Vincent Garin, Chiaka Diallo, Mohamed Lamine Tékété, Korotimi Théra, Baptiste Guitton, David Pot

Genetics· April 2024

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National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence.
Andrey Fedorov, William J R Longabaugh, David Pot, David A Clunie, Steven D Pieper

Radiographics· December 2023

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A cloud-based resource for genome coordinate-based exploration and large-scale analysis of chromosome aberrations and gene fusions in cancer.
Janet Wang, Jeanne Zheng, Elaine E Lee, Boris Aguilar, John Phan, David Pot

Genes Chromosomes Cancer· August 2023

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SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery.
Bahar Tercan, Guangrong Qin, Taek-Kyun Kim, Boris Aguilar, John Phan, David Pot

F1000Res· February 2023

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Whole Genome Variant Dataset for Enriching Studies across 18 Different Cancers.
John Torcivia, Kawther Abdilleh, Fabian Seidl, Owais Shahzada, Rebecca Rodriguez, David Pot

Onco (Basel)· June 2022

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The Road to Sorghum Domestication: Evidence From Nucleotide Diversity and Gene Expression Patterns.
Concetta Burgarella, Angélique Berger, Sylvain Glémin, Jacques David, Nancy Terrier, David Pot

Front Plant Sci· August 2021

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Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses.
Lauriane Hennet, Angélique Berger, Noemi Trabanco, Emeline Ricciuti, Jean-François Dufayard, David Pot

Front Plant Sci· March 2020

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Population structure and genetic relationships between Ethiopian and Brazilian Coffea arabica genotypes revealed by SSR markers.
Bruna Silvestre Rodrigues da Silva, Gustavo César Sant'Ana, Camila Lucas Chaves, Leonardo Godoy Androcioli, Rafaelle Vecchia Ferreira, David Pot

Genetica· April 2019

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Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.
Gustavo C Sant'Ana, Luiz F P Pereira, David Pot, Suzana T Ivamoto, Douglas S Domingues

Sci Rep· January 2018

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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.
Sheila M Reynolds, Michael Miller, Phyliss Lee, Kalle Leinonen, Suzanne M Paquette, David Pot

Cancer Res· November 2017

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Domestication reduces alternative splicing expression variations in sorghum.
Vincent Ranwez, Audrey Serra, David Pot, Nathalie Chantret

PLoS One· October 2017

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Plasticity of Sorghum Stem Biomass Accumulation in Response to Water Deficit: A Multiscale Analysis from Internode Tissue to Plant Level.
Lisa Perrier, Lauriane Rouan, Sylvie Jaffuel, Anne Clément-Vidal, Sandrine Roques, David Pot

Front Plant Sci· September 2017

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Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis.
Suzana Tiemi Ivamoto, Osvaldo Reis, Douglas Silva Domingues, Tiago Benedito Dos Santos, Fernanda Freitas de Oliveira, David Pot

PLoS One· August 2017

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Influence of the radial stem composition on the thermal behaviour of miscanthus and sorghum genotypes.
Lucie Chupin, Dieter de Ridder, Anne Clément-Vidal, Armelle Soutiras, Emilie Gineau, David Pot

Carbohydr Polym· July 2017

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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.
Gautier Sarah, Felix Homa, Stéphanie Pointet, Sandy Contreras, François Sabot, David Pot

Mol Ecol Resour· May 2017

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Evolutionary forces affecting synonymous variations in plant genomes.
Yves Clément, Gautier Sarah, Yan Holtz, Felix Homa, Stéphanie Pointet, David Pot

PLoS Genet· May 2017

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Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development.
Suzana T Ivamoto, Leonardo M Sakuray, Lucia P Ferreira, Cíntia S G Kitzberger, Maria B S Scholz, David Pot

Plant Physiol Biochem· February 2017

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Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars.
Luciana Souto Mofatto, Fernanda de Araújo Carneiro, Natalia Gomes Vieira, Karoline Estefani Duarte, Ramon Oliveira Vidal, David Pot

BMC Plant Biol· April 2016

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