Publications by authors named "David Vallenet"

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A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.
Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga

Microb Biotechnol· June 2023

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Complete genome sequence of strain MNA2.1 isolated from sediments of the Berre lagoon, France.
Nathalie Pradel, Stéphanie Fouteau, Manon Bartoli, Zoé Rouy, Corinne Cruaud, David Vallenet

Microbiol Resour Announc· October 2025

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Complete genome sequence of . strain 1Nfss2.1 from marine sediments of the Berre lagoon, France.
Manon Bartoli, Nathalie Pradel, Stéphanie Fouteau, Zoé Rouy, Corinne Cruaud, David Vallenet

Microbiol Resour Announc· August 2025

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ASMC: investigating the amino acid diversity of enzyme active sites.
Thomas Bailly, Eddy Elisée, David Vallenet

Bioinformatics· June 2025

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Magnetotactic bacteria affiliated with diverse Pseudomonadota families biomineralize intracellular Ca-carbonate.
Camille C Mangin, Karim Benzerara, Marine Bergot, Nicolas Menguy, Béatrice Alonso, David Vallenet

ISME J· January 2025

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A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening.
Eddy Elisée, Laurine Ducrot, Raphaël Méheust, Karine Bastard, Aurélie Fossey-Jouenne, David Vallenet

Nat Commun· June 2024

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A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins.
Rania Jabeur, Virginie Guyon, Szabolcs Toth, Adriano E Pereira, Man P Huynh, David Vallenet

PLoS One· February 2023

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Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform.
David Roche, Alexandra Calteau, David Vallenet

Methods Mol Biol· December 2022

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Magnetosome proteins belong to universal protein families involved in many cell processes.
Caroline L Monteil, David Vallenet, Dirk Schüler, Christopher T Lefevre

Proc Natl Acad Sci U S A· September 2022

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A roadmap for the functional annotation of protein families: a community perspective.
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, David Vallenet

Database (Oxford)· August 2022

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Complete Genome Sequence of sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam.
Stéphanie Fouteau, Vuong Bui Van, Zoé Rouy, Mélanie Beraud, Corinne Cruaud, David Vallenet

Microbiol Resour Announc· July 2022

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Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, David Vallenet

PLoS Comput Biol· December 2021

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From Strain Characterization to Field Authorization: Highlights on Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi.
Pierre Joly, Alexandra Calteau, Aurélie Wauquier, Rémi Dumas, Mylène Beuvin, David Vallenet

Microorganisms· September 2021

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Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period.
Guilhem Royer, Mélanie Mercier Darty, Olivier Clermont, Bénédicte Condamine, Cédric Laouenan, David Vallenet

Genome Med· May 2021

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Complete Genome Sequences of Two Species Isolated from Marine Environments of the Pacific Ocean.
Shi-Zhen Wang, Corinne Cruaud, Jean-Marc Aury, David Vallenet, Julie Poulain

Microbiol Resour Announc· April 2021

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panRGP: a pangenome-based method to predict genomic islands and explore their diversity.
Adelme Bazin, Guillaume Gautreau, Claudine Médigue, David Vallenet, Alexandra Calteau

Bioinformatics· December 2020

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Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen.
Alastair Muir, Ishwori Gurung, Ana Cehovin, Adelme Bazin, David Vallenet

Nat Commun· November 2020

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Erratum for Jouault et al., "Alterocin, an Antibiofilm Protein Secreted by sp. Strain 3J6".
Albane Jouault, Angélique Gobet, Marjolaine Simon, Emilie Portier, Morgan Perennou, David Vallenet

Appl Environ Microbiol· November 2020

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Alterocin, an Antibiofilm Protein Secreted by sp. Strain 3J6.
Albane Jouault, Angélique Gobet, Marjolaine Simon, Emilie Portier, Morgan Perennou, David Vallenet

Appl Environ Microbiol· October 2020

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, David Vallenet

PLoS Comput Biol· March 2020

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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
David Vallenet, Alexandra Calteau, Mathieu Dubois, Paul Amours, Adelme Bazin

Nucleic Acids Res· January 2020

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Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist.
Caroline L Monteil, David Vallenet, Nicolas Menguy, Karim Benzerara, Valérie Barbe

Nat Microbiol· July 2019

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Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by 9 to Adapt to Macroalgal Niches.
Angélique Gobet, Tristan Barbeyron, Maria Matard-Mann, Ghislaine Magdelenat, David Vallenet

Front Microbiol· November 2018

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Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia.
Djamel Gully, Pierre Czernic, Stéphane Cruveiller, Frédéric Mahé, Cyrille Longin, David Vallenet

Sci Rep· July 2018

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GROOLS: reactive graph reasoning for genome annotation through biological processes.
Jonathan Mercier, Adrien Josso, Claudine Médigue, David Vallenet

BMC Bioinformatics· April 2018

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