Publications by authors named "Dmitry Meleshko"

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Robert C Edgar, Brie Taylor, Victor Lin, Tomer Altman, Pierre Barbera, Dmitry Meleshko, Dan Lohr, Gherman Novakovsky, Benjamin Buchfink, Basem Al-Shayeb

February 2022

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A global metagenomic map of urban microbiomes and antimicrobial resistance.
David Danko, Daniela Bezdan, Evan E Afshin, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel J Butler, Kern Rei Chng, Daisy Donnellan, Jochen Hecht, Katelyn Jackson

June 2021

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Taxonomically different symbiotic communities of sympatric Arctic sponge species show functional similarity with specialization at species level.
Anastasiia Rusanova, Viktor Mamontov, Maxim Ri, Dmitry Meleshko, Anna Trofimova

mSystems· November 2025

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13q Deletion Syndrome Presenting with Lymphopenia Detected Through Newborn Screening for Primary Immunodeficiencies.
Irina Efimova, Anna Mukhina, Zhanna Markova, Sergey Mordanov, Irina Soprunova, Dmitry Meleshko

Int J Mol Sci· September 2025

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Blackbird: structural variant detection using synthetic and low-coverage long-reads.
Dmitry Meleshko, Rui Yang, Salil Maharjan, David C Danko, Anton Korobeynikov

Bioinform Adv· July 2025

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CAMP: A modular metagenomics analysis system for integrated multi-step data exploration.
Lauren Mak, Braden Tierney, Wei Wei, Cynthia Ronkowski, Rodolfo Brizola Toscan, Dmitry Meleshko

bioRxiv· April 2025

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Structure and Biosynthetic Gene Cluster of Sulfated Capsular Polysaccharide from the Marine Bacterium sp. KMM 8419.
Maxim S Kokoulin, Yulia V Savicheva, Nadezhda Y Otstavnykh, Valeria V Kurilenko, Dmitry A Meleshko

Int J Mol Sci· December 2024

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Blackbird: structural variant detection using synthetic and low-coverage long-reads.
Dmitry Meleshko, Rui Yang, Salil Maharjan, David C Danko, Anton Korobeynikov

bioRxiv· November 2024

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cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen Tilgner

Bioinformatics· February 2024

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Ariadne: synthetic long read deconvolution using assembly graphs.
Lauren Mak, Dmitry Meleshko, David C Danko, Waris N Barakzai, Salil Maharjan

Genome Biol· August 2023

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cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data.
Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen Tilgner

bioRxiv· July 2023

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Benchmarking State-of-the-Art Approaches for Norovirus Genome Assembly in Metagenome Sample.
Dmitry Meleshko, Anton Korobeynikov

Biology (Basel)· July 2023

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Cue: a deep-learning framework for structural variant discovery and genotyping.
Victoria Popic, Chris Rohlicek, Fabio Cunial, Iman Hajirasouliha, Dmitry Meleshko

Nat Methods· April 2023

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Efficient detection and assembly of non-reference DNA sequences with synthetic long reads.
Dmitry Meleshko, Rui Yang, Patrick Marks, Stephen Williams, Iman Hajirasouliha

Nucleic Acids Res· October 2022

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Critical Assessment of Metagenome Interpretation: the second round of challenges.
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Dmitry Meleshko

Nat Methods· April 2022

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coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.
Dmitry Meleshko, Iman Hajirasouliha, Anton Korobeynikov

Bioinformatics· December 2021

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A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology-Radiology Fusion.
Pegah Khosravi, Maria Lysandrou, Mahmoud Eljalby, Qianzi Li, Ehsan Kazemi, Dmitry Meleshko

J Magn Reson Imaging· August 2021

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A comprehensive metagenomics framework to characterize organisms relevant for planetary protection.
David C Danko, Maria A Sierra, James N Benardini, Lisa Guan, Jason M Wood, Dmitry Meleshko

Microbiome· April 2021

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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.
Daniel Butler, Christopher Mozsary, Cem Meydan, Jonathan Foox, Joel Rosiene, Dmitry Meleshko

Nat Commun· March 2021

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Using SPAdes De Novo Assembler.
Andrey Prjibelski, Dmitry Antipov, Dmitry Meleshko, Alla Lapidus, Anton Korobeynikov

Curr Protoc Bioinformatics· June 2020

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Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.
Daniel J Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Dmitry Meleshko

bioRxiv· May 2020

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BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs.
Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H Medema

Genome Res· August 2019

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Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics.
David C Danko, Dmitry Meleshko, Daniela Bezdan, Christopher Mason, Iman Hajirasouliha

Genome Res· January 2019

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metaSPAdes: a new versatile metagenomic assembler.
Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A Pevzner

Genome Res· May 2017

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