Publications by authors named "Ellen Neidle"

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Rewiring Aromatic Compound Consumption: Chromosomal Amplification and Evolution of a Foreign Pathway in ADP1.
Alyssa C Baugh, Melissa P Tumen-Velasquez, Isabella R Zempel, Chantel V Duscent-Maitland, Lauren E Slarks, Ellen L Neidle

ACS Synth Biol· September 2025

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CsrA-mediated regulation of a virulence switch in .
Raja Singh, María Pérez-Varela, Jennifer M Colquhoun, Carsten Kröger, Fergal J Hamrock, Ellen L Neidle

mBio· April 2025

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Regulation of tricarboxylate transport and metabolism in ADP1.
Alyssa C Baugh, Justin B Defalco, Chantel V Duscent-Maitland, Melissa P Tumen-Velasquez, Nicole S Laniohan, Ellen L Neidle

Appl Environ Microbiol· February 2024

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Versatility and Complexity: Common and Uncommon Facets of LysR-Type Transcriptional Regulators.
Alyssa C Baugh, Cory Momany, Ellen L Neidle

Annu Rev Microbiol· September 2023

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Gene amplification mutations originate prior to selective stress in Acinetobacter baylyi.
Jennifer A Herrmann, Agata Koprowska, Tesa J Winters, Nancy Villanueva, Victoria D Nikityuk, Ellen L Neidle

G3 (Bethesda)· March 2023

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Regulation of l- and d-Aspartate Transport and Metabolism in Acinetobacter baylyi ADP1.
Stacy R Bedore, Alicia L Schmidt, Lauren E Slarks, Chantel V Duscent-Maitland, Kathryn T Elliott, Ellen L Neidle

Appl Environ Microbiol· August 2022

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Characterization of Highly Ferulate-Tolerant Acinetobacter baylyi ADP1 Isolates by a Rapid Reverse Engineering Method.
Jin Luo, Emily A McIntyre, Stacy R Bedore, Ville Santala, Ellen L Neidle

Appl Environ Microbiol· January 2022

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Gene amplification, laboratory evolution, and biosensor screening reveal MucK as a terephthalic acid transporter in Acinetobacter baylyi ADP1.
Isabel Pardo, Ramesh K Jha, Ryan E Bermel, Felicia Bratti, Molly Gaddis, Ellen L Neidle

Metab Eng· November 2020

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Development of a genetic toolset for the highly engineerable and metabolically versatile Acinetobacter baylyi ADP1.
Bradley W Biggs, Stacy R Bedore, Erika Arvay, Shu Huang, Harshith Subramanian, Ellen L Neidle

Nucleic Acids Res· May 2020

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Enabling microbial syringol conversion through structure-guided protein engineering.
Melodie M Machovina, Sam J B Mallinson, Brandon C Knott, Alexander W Meyers, Marc Garcia-Borràs, Ellen L Neidle

Proc Natl Acad Sci U S A· July 2019

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Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors.
Melissa P Tumen-Velasquez, Nicole S Laniohan, Cory Momany, Ellen L Neidle

Genes (Basel)· May 2019

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Removal of aromatic inhibitors produced from lignocellulosic hydrolysates by ADP1 with formation of ethanol by .
Anita Singh, Stacy R Bedore, Nilesh K Sharma, Sarah A Lee, Mark A Eiteman, Ellen L Neidle

Biotechnol Biofuels· April 2019

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Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators.
Richard M Jones, David L Popham, Alicia L Schmidt, Ellen L Neidle, Eric V Stabb

J Bacteriol· August 2018

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Accelerating pathway evolution by increasing the gene dosage of chromosomal segments.
Melissa Tumen-Velasquez, Christopher W Johnson, Alaa Ahmed, Graham Dominick, Emily M Fulk, Ellen L Neidle

Proc Natl Acad Sci U S A· July 2018

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A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion.
Sam J B Mallinson, Melodie M Machovina, Rodrigo L Silveira, Marc Garcia-Borràs, Nathan Gallup, Ellen L Neidle

Nat Commun· June 2018

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Malonate degradation in ADP1: operon organization and regulation by MdcR.
Julie L Stoudenmire, Alicia L Schmidt, Melissa P Tumen-Velasquez, Kathryn T Elliott, Nicole S Laniohan, Ellen L Neidle

Microbiology (Reading)· May 2017

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Novel heterologous bacterial system reveals enhanced susceptibility to DNA damage mediated by yqgF, a nearly ubiquitous and often essential gene.
Dylan J McClung, Abigail Calixto, Mackenzie N Mosera, Raagni Kumar, Ellen L Neidle

Microbiology (Reading)· October 2016

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The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators.
Amer M Alanazi, Ellen L Neidle, Cory Momany

Acta Crystallogr D Biol Crystallogr· October 2013

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Copy number change: evolving views on gene amplification.
Kathryn T Elliott, Laura E Cuff, Ellen L Neidle

Future Microbiol· July 2013

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Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1.
Laura E Cuff, Kathryn T Elliott, Sarah C Seaton, Maliha K Ishaq, Nicole S Laniohan, Ellen L Neidle

J Bacteriol· August 2012

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Genome-wide selection for increased copy number in Acinetobacter baylyi ADP1: locus and context-dependent variation in gene amplification.
Sarah C Seaton, Kathryn T Elliott, Laura E Cuff, Nicole S Laniohan, Poonam R Patel, Ellen L Neidle

Mol Microbiol· February 2012

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Defying stereotypes: the elusive search for a universal model of LysR-type regulation.
Cory Momany, Ellen L Neidle

Mol Microbiol· February 2012

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Acinetobacter baylyi ADP1: transforming the choice of model organism.
Kathryn T Elliott, Ellen L Neidle

IUBMB Life· December 2011

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Discovery of a gene involved in a third bacterial protoporphyrinogen oxidase activity through comparative genomic analysis and functional complementation.
Tye O Boynton, Svetlana Gerdes, Sarah H Craven, Ellen L Neidle, John D Phillips

Appl Environ Microbiol· July 2011

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Full-length structures of BenM and two variants reveal different oligomerization schemes for LysR-type transcriptional regulators.
Ajchareeya Ruangprasert, Sarah H Craven, Ellen L Neidle, Cory Momany

J Mol Biol· December 2010

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