Publications by authors named "HL Crowell"

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On feature selection to disentangle cell type and state transcriptional programs.
Jiayi Wang, Helena L Crowell, Mark D Robinson

BMC Genomics· November 2025

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Orchestrating Spatial Transcriptomics Analysis with Bioconductor.
Helena L Crowell, Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons

bioRxiv· November 2025

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Differential detection workflows for multi-sample single-cell RNA-seq data.
Jeroen Gilis, Laura Perin, Milan Malfait, Helena L Crowell, Koen Van den Berge

BMC Genomics· October 2025

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STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging.
Emanuele Pitino, Anna Pascual-Reguant, Felipe Segato-Dezem, Kellie Wise, Irepan Salvador-Martinez, Helena Lucia Crowell

Cell· September 2025

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Harnessing the potential of spatial statistics for spatial omics data with pasta.
Martin Emons, Samuel Gunz, Helena L Crowell, Izaskun Mallona, Malte Kuehl

Nucleic Acids Res· September 2025

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Differential performance of aqueous- and ethylic-Lugol's iodine stain to visualize anatomy in μCT-scanned vertebrates.
Hayley L Crowell, Ramon S Nagesan, Alison R Davis Rabosky, Matthew A Kolmann

J Anat· May 2025

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High thermal quality rookeries facilitate high thermoregulatory accuracy in pregnant female rattlesnakes.
Haley A Moniz, Jack H Buck, Hayley L Crowell, Scott M Goetz, Trevor D Ruiz

J Therm Biol· August 2024

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The tidyomics ecosystem: enhancing omic data analyses.
William J Hutchison, Timothy J Keyes, , Helena L Crowell, Jacques Serizay

Nat Methods· July 2024

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Author Correction: The shaky foundations of simulating single-cell RNA sequencing data.
Helena L Crowell, Sarah X Morillo Leonardo, Charlotte Soneson, Mark D Robinson

Genome Biol· July 2024

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Ecological drivers of ultraviolet colour evolution in snakes.
Hayley L Crowell, John David Curlis, Hannah I Weller, Alison R Davis Rabosky

Nat Commun· June 2024

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The ecosystem: Enhancing omic data analyses.
William J Hutchison, Timothy J Keyes, , Helena L Crowell, Jacques Serizay

bioRxiv· May 2024

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Author Correction: Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease.
Alba Garrido-Trigo, Ana M Corraliza, Marisol Veny, Isabella Dotti, Elisa Melón-Ardanaz, Helena L Crowell

Nat Commun· January 2024

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Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease.
Alba Garrido-Trigo, Ana M Corraliza, Marisol Veny, Isabella Dotti, Elisa Melón-Ardanaz, Helena L Crowell

Nat Commun· July 2023

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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.
Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Helena L Crowell

Genome Biol· May 2023

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The Batrachian Barf Bowl: An authentic research experience using ecological data from frog diets.
Joanna G Larson, Hayley L Crowell, Lisa L Walsh, Alison R Davis Rabosky

Ecol Evol· July 2022

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SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
Dario Righelli, Lukas M Weber, Helena L Crowell, Brenda Pardo, Leonardo Collado-Torres

Bioinformatics· May 2022

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Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma.
Karin D Prummel, Helena L Crowell, Susan Nieuwenhuize, Eline C Brombacher, Stephan Daetwyler

Nat Commun· March 2022

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Predicting neurological recovery after traumatic spinal cord injury by time-resolved analysis of monocyte subsets.
Raban Arved Heller, Julian Seelig, Helena Lucia Crowell, Maximilian Pilz, Patrick Haubruck

Brain· November 2021

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Climatic factors impacting thermoregulatory behaviours of coastal and inland rattlesnakes.
Paul H Maier, Thomas M Nhu, Hayley L Crowell, Jeffery C Sklar, Emily N Taylor

Behav Processes· September 2021

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CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data.
Almut Lütge, Joanna Zyprych-Walczak, Urszula Brykczynska Kunzmann, Helena L Crowell, Daniela Calini

Life Sci Alliance· June 2021

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Thermal ecology and baseline energetic requirements of a large-bodied ectotherm suggest resilience to climate change.
Hayley L Crowell, Katherine C King, James M Whelan, Mallory V Harmel, Gennesee Garcia

Ecol Evol· June 2021

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Selenium-Binding Protein 1 (SELENBP1) as Biomarker for Adverse Clinical Outcome After Traumatic Spinal Cord Injury.
Julian Seelig, Raban Arved Heller, Patrick Haubruck, Qian Sun, Jochen Georg Klingenberg, Helena Lucia Crowell

Front Neurosci· May 2021

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muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data.
Helena L Crowell, Charlotte Soneson, Pierre-Luc Germain, Daniela Calini, Ludovic Collin

Nat Commun· November 2020

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An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data.
Helena L Crowell, Stéphane Chevrier, Andrea Jacobs, Sujana Sivapatham,

F1000Res· October 2020

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