Publications by authors named "Hal Alper"

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Emerging hosts for metabolic engineering.
Hal S Alper

Metab Eng· January 2026

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Developing a Yarrowia lipolytica platform for conversion of mannitol-containing waste streams.
Angela R Gordillo Sierra, Sangdo Yook, Sarah Coleman, Mayur Bansal, Hal S Alper

Bioresour Technol· December 2025

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The Impact of Protein Content and Fouling on Enzymatic Degradation of Polyethylene Terephthalate.
Amelia R Bergeson, Larissa G S Aspiras, Giulianna V Bland, Jessica L M Lam, Hal S Alper

Biotechnol Bioeng· November 2025

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Genome-scale prediction of gene ontology from mass fingerprints reveals new metabolic gene functions.
Christopher J Vavricka, Masao Mochizuki, Satoshi Yuzawa, Masahiro Murata, Takanobu Yoshida, Hal S Alper

Life Sci Alliance· November 2025

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Theranostic Probiotic Engineered Living Materials That Dynamically Respond to Inflammation Markers.
Gokce Altin-Yavuzarslan, Sierra M Brooks, James O Park, Kevin B Reed, McKenna Flynn, Hal S Alper

Adv Healthc Mater· September 2025

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Bioconversion yields must account for all carbon: hidden biases from complex media.
Sangdo Yook, Hal S Alper

Trends Biotechnol· August 2025

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Big data and machine learning: Metabolic engineering special issue.
Hal S Alper

Metab Eng· May 2025

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Metabolic Engineering of for Conversion of Waste Cooking Oil into Omega-3 Eicosapentaenoic Acid.
Jiansong Qin, Na Liu, Umer Abid, Sarah M Coleman, Yongdan Wang, Hal S Alper

ACS Eng Au· April 2025

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Single-cell phenotyping of extracellular electron transfer via microdroplet encapsulation.
Gina Partipilo, Emily K Bowman, Emma J Palmer, Yang Gao, Rodney S Ridley, Hal S Alper

Appl Environ Microbiol· January 2025

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Recent advances in genetic engineering and chemical production in yeast species.
Sangdo Yook, Hal S Alper

FEMS Yeast Res· January 2025

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Plastic degradation by enzymes from uncultured deep sea microorganisms.
Daniel J Acosta, Daryl R Barth, Julie Bondy, Kathryn E Appler, Valerie De Anda, Hal S Alper

ISME J· January 2025

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Considerations Regarding High Oil Density Bioreactor-Scale Fermentations of Yarrowia lipolytica Using CFD Modeling and Experimental Validation.
Sarah M Coleman, Richard J Marx, Morgan K Martinez, Ashli J Silvera, Junwon Park, Hal S Alper

Biotechnol J· December 2024

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A Linear Mixed Effects Model for Evaluating Synthetic Gene Circuits.
Gina Partipilo, Sarah M Coleman, Yang Gao, Ismar E Miniel Mahfoud, Claus O Wilke, Hal S Alper

bioRxiv· December 2024

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Advancing sustainable biotechnology through protein engineering.
Amelia R Bergeson, Hal S Alper

Trends Biochem Sci· November 2024

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Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system.
Kevin B Reed, Wantae Kim, Hongyuan Lu, Clayton T Larue, Shirley Guo, Hal S Alper

Proc Natl Acad Sci U S A· August 2024

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Design and synthesis of synthetic promoters for consistency of gene expression across growth phases and scale in .
Kristin V Presnell, Omar Melhem, Sarah M Coleman, Nicholas J Morse, Hal S Alper

Synth Syst Biotechnol· June 2024

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Bottlenecks in biobased approaches to plastic degradation.
Amelia R Bergeson, Ashli J Silvera, Hal S Alper

Nat Commun· June 2024

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Author Correction: A modular and synthetic biosynthesis platform for de novo production of diverse halogenated tryptophan-derived molecules.
Kevin B Reed, Sierra M Brooks, Jordan Wells, Kristin J Blake, Minye Zhao, Hal S Alper

Nat Commun· June 2024

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Single-Cell Phenotyping of Extracellular Electron Transfer via Microdroplet Encapsulation.
Gina Partipilo, Emily K Bowman, Emma J Palmer, Yang Gao, Rodney S Ridley, Hal S Alper

bioRxiv· June 2024

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Engineered Living Material Bioreactors with Tunable Mechanical Properties using Vat Photopolymerization.
Gokce Altin-Yavuzarslan, Naroa Sadaba, Sierra M Brooks, Hal S Alper, Alshakim Nelson

Small· May 2024

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Leveraging a Y. lipolytica naringenin chassis for biosynthesis of apigenin and associated glucoside.
Celeste B Marsan, Sung Gyung Lee, Ankim Nguyen, Angela R Gordillo Sierra, Sarah M Coleman, Hal S Alper

Metab Eng· May 2024

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Fluorescence-Based Screens for Engineering Enzymes Linked to Halogenated Tryptophan.
Kevin B Reed, Simon d'Oelsnitz, Sierra M Brooks, Jordan Wells, Minye Zhao, Hal S Alper

ACS Synth Biol· April 2024

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A modular and synthetic biosynthesis platform for de novo production of diverse halogenated tryptophan-derived molecules.
Kevin B Reed, Sierra M Brooks, Jordan Wells, Kristin J Blake, Minye Zhao, Hal S Alper

Nat Commun· April 2024

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Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme.
Simon d'Oelsnitz, Daniel J Diaz, Wantae Kim, Daniel J Acosta, Tyler L Dangerfield, Hal S Alper

Nat Commun· March 2024

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Advances in enzymatic and organismal technologies for the recycling and upcycling of petroleum-derived plastic waste.
Daniel J Acosta, Hal S Alper

Curr Opin Biotechnol· December 2023

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