Publications by authors named "Hans-Joachim Ruscheweyh"

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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.
Corentin Hochart, Lucas Paoli, Hans-Joachim Ruscheweyh, Guillem Salazar, Emilie Boissin, Sarah Romac, Julie Poulain, Guillaume Bourdin, Guillaume Iwankow, Clémentine Moulin

Nat Commun· June 2023

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Diversity of the Pacific Ocean coral reef microbiome.
Pierre E Galand, Hans-Joachim Ruscheweyh, Guillem Salazar, Corentin Hochart, Nicolas Henry, Benjamin C C Hume, Pedro H Oliveira, Aude Perdereau, Karine Labadie, Caroline Belser

Nat Commun· June 2023

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Identification of a deep-branching lineage of algae using environmental plastid genomes.
Mahwash Jamy, Thomas Huber, Thibault Antoine, Hans-Joachim Ruscheweyh, Lucas Paoli

Nat Commun· December 2025

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Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes.
Sofia Medvedeva, Ulysse Guyet, Eric Pelletier, Hans-Joachim Ruscheweyh, Shinichi Sunagawa

Nat Microbiol· November 2025

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Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota.
Mara D Maeke, Xiuran Yin, Lea C Wunder, Chiara Vanni, Tim Richter-Heitmann, Hans-Joachim Ruscheweyh

Microbiome· July 2025

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The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities.
Marija Dmitrijeva, Hans-Joachim Ruscheweyh, Lilith Feer, Kang Li, Samuel Miravet-Verde

Nucleic Acids Res· January 2025

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Assessing environmental gradients in relation to dark CO fixation in estuarine wetland microbiomes.
Luise Grüterich, Jason Nicholas Woodhouse, Peter Mueller, Amos Tiemann, Hans-Joachim Ruscheweyh

Appl Environ Microbiol· January 2025

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Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome.
Fabienne Wiederkehr, Kara Elena Engelhardt, Jana Vetter, Hans-Joachim Ruscheweyh, Guillem Salazar

ISME Commun· January 2025

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Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.
Chandrashekhar Padhi, Christopher M Field, Clarissa C Forneris, Dominik Olszewski, Amy E Fraley, Hans-Joachim Ruscheweyh

Proc Natl Acad Sci U S A· December 2024

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High diversity of crustose coralline algae microbiomes across species and islands, and implications for coral recruits.
Corentin Hochart, Héloïse Rouzé, Béatrice Rivière, Hans-Joachim Ruscheweyh, Laetitia Hédouin

Environ Microbiome· December 2024

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The NEREA Augmented Observatory: an integrative approach to marine coastal ecology.
Lucia Campese, Luca Russo, Maria Abagnale, Adriana Alberti, Giancarlo Bachi, Hans-Joachim Ruscheweyh

Sci Data· September 2024

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Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores.
Qing Li, Hans-Joachim Ruscheweyh, Lærke Hartmann Østergaard, Micael Libertella, Kim Skalborg Simonsen

Microbiome· September 2024

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Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions.
Senka Čaušević, Manupriyam Dubey, Marian Morales, Guillem Salazar, Vladimir Sentchilo, Hans-Joachim Ruscheweyh

Nat Commun· March 2024

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Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters.
Cristian Villena-Alemany, Izabela Mujakić, Livia K Fecskeová, Jason Woodhouse, Adrià Auladell, Hans-Joachim Ruscheweyh

Microbiome· March 2024

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Functional and evolutionary significance of unknown genes from uncultivated taxa.
Álvaro Rodríguez Del Río, Joaquín Giner-Lamia, Carlos P Cantalapiedra, Jorge Botas, Ziqi Deng, Hans-Joachim Ruscheweyh

Nature· February 2024

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mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations.
Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M Field, Lilith Feer, Bidong D Nguyen

Bioinformatics· February 2024

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A cryptic plasmid is among the most numerous genetic elements in the human gut.
Emily C Fogarty, Matthew S Schechter, Karen Lolans, Madeline L Sheahan, Iva Veseli, Hans-Joachim Ruscheweyh

Cell· February 2024

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SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
Thomas S B Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr M Maistrenko, Hans-Joachim Ruscheweyh

Nucleic Acids Res· January 2024

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Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments.
Kathrin B L Baumann, Alessandra Mazzoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Beat Müller

ISME Commun· January 2024

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From microbiome composition to functional engineering, one step at a time.
Sebastian Dan Burz, Senka Causevic, Alma Dal Co, Marija Dmitrijeva, Philipp Engel, Hans-Joachim Ruscheweyh

Microbiol Mol Biol Rev· December 2023

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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes.
Alex J Veglia, Kalia S I Bistolas, Christian R Voolstra, Benjamin C C Hume, Hans-Joachim Ruscheweyh

Commun Biol· June 2023

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Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
Hans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, Nicolai Karcher, Quentin Clayssen

Microbiome· December 2022

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Biosynthetic potential of the global ocean microbiome.
Lucas Paoli, Hans-Joachim Ruscheweyh, Clarissa C Forneris, Florian Hubrich, Satria Kautsar

Nature· July 2022

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