Publications by authors named "Holub Petr"

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Definitions to data flow: Operationalizing MIABIS in HL7 FHIR.
Radovan Tomášik, Šimon Koňár, Niina Eklund, Cäcilia Engels, Zdenka Dudova, Petr Holub

J Biomed Inform· November 2025

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Genomic data sharing in research across Europe: legal challenges and upcoming opportunities within the European Health Data Space.
Romina Royo, Eva Garcia, Irene Schlünder, Christina Hilmarsen, Mette Kielsholm Thomsen, Petr Holub

Eur J Public Health· September 2025

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User journeys in cross-European secondary use of health data: insights ahead of the European Health Data Space.
Rachel B Forster, Eva Garcia Alvarez, Adrian G Zucco, Enrique Bernal-Delgado, Gayo Diallo, Petr Holub

Eur J Public Health· September 2025

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Machine learning in digital pathology.
Tomáš Brázdil, Vít Musil, Karel Štěpka, Adam Kukučka, Rudolf Nenutil, Petr Holub

Cesk Patol· August 2025

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Next-generation sequencing in the molecular classification of endometrial carcinomas: Experience with 270 cases suggesting a potentially more aggressive clinical behavior of multiple classifier endometrial carcinomas.
Kvetoslava Michalova, Andrea Strakova-Peterikova, Ondrej Ondic, Tomas Vanecek, Michael Michal, Petr Holub, Petr Slavik

Virchows Arch· July 2025

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Introduction to Machine Learning for Pathologists.
Tomáš Brázdil, Adam Kukučka, Vít Musil, Rudolf Nenutil, Petr Holub

Cesk Patol· June 2025

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Lessons Learned From European Health Data Projects With Cancer Use Cases: Implementation of Health Standards and Internet of Things Semantic Interoperability.
Amelie Gyrard, Somayeh Abedian, Philip Gribbon, George Manias, Rick van Nuland, Petr Holub

J Med Internet Res· March 2025

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Advantages of next-generation sequencing (NGS) in the molecular classifi cation of endometrial carcinomas - our experience with 270 cases.
Květoslava Michalová, Jiří Presl, Andrea Straková-Peteříková, Ondrej Ondič, Tomáš Vaneček, Petr Holub, Petr Slavík

Ceska Gynekol· November 2024

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Linking the ECRIN Metadata Repository with the BBMRI-ERIC Directory to connect clinical studies with related biobanks and collections.
Christian Ohmann, Steve Canham, Kurt Majcen, Vittorio Meloni, Luca Pireddu, Petr Holub

Open Res Eur· October 2024

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Update of the Minimum Information About BIobank Data Sharing (MIABIS) Core Terminology to the 3 Version.
Niina Eklund, Cäcilia Engels, Michael Neumann, Andrzej Strug, Esther van Enckevort, Petr Holub

Biopreserv Biobank· August 2024

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Getting your DUCs in a row - standardising the representation of Digital Use Conditions.
Francis Jeanson, Spencer J Gibson, Pinar Alper, Alexander Bernier, J Patrick Woolley, Petr Holub

Sci Data· May 2024

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Sharing sensitive data in life sciences: an overview of centralized and federated approaches.
Maria A Rujano, Jan-Willem Boiten, Christian Ohmann, Steve Canham, Sergio Contrino, Petr Holub

Brief Bioinform· May 2024

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Differential physiological and production responses of C3 and C4 crops to climate factor interactions.
Emmanuel Opoku, Pranav Pankaj Sahu, Hana Findurová, Petr Holub, Otmar Urban

Front Plant Sci· February 2024

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Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra.
Erik Képeš, Jakub Vrábel, Tomáš Brázdil, Petr Holub, Pavel Pořízka

Talanta· January 2024

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Toward a common standard for data and specimen provenance in life sciences.
Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müller

Learn Health Syst· January 2024

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Provenance of specimen and data - A prerequisite for AI development in computational pathology.
Markus Plass, Rudolf Wittner, Petr Holub, Francesca Frexia, Cecilia Mascia

N Biotechnol· December 2023

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Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability.
Matej Gallo, Vojtěch Krajňanský, Rudolf Nenutil, Petr Holub, Tomáš Brázdil

N Biotechnol· December 2023

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"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
Romain David, Arina Rybina, Jean-Marie Burel, Jean-Karim Heriche, Pauline Audergon, Petr Holub

EMBO J· December 2023

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BIBBOX, a FAIR toolbox and App Store for life science research.
Heimo Müller, Catarina Lopes-Dias, Petr Holub, Markus Plass, Emilian Jungwirth

N Biotechnol· November 2023

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Growth, physiology, and stomatal parameters of plant polyploids grown under ice age, present-day, and future CO concentrations.
Petr Šmarda, Karel Klem, Ondřej Knápek, Barbora Veselá, Kristýna Veselá, Petr Holub, Petr Bureš

New Phytol· July 2023

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The effect of elevated CO2 on photosynthesis is modulated by nitrogen supply and reduced water availability in Picea abies.
Kojo Kwakye Ofori-Amanfo, Karel Klem, Barbora Veselá, Petr Holub, Thomas Agyei

Tree Physiol· June 2023

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AI for life: Trends in artificial intelligence for biotechnology.
Andreas Holzinger, Katharina Keiblinger, Petr Holub, Kurt Zatloukal, Heimo Müller

N Biotechnol· May 2023

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Privacy risks of whole-slide image sharing in digital pathology.
Petr Holub, Heimo Müller, Tomáš Bíl, Luca Pireddu, Markus Plass

Nat Commun· May 2023

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UV radiation and drought interact differently in grass and forb species of a mountain grassland.
Barbora Veselá, Petr Holub, Otmar Urban, Kateřina Surá, Petra Hodaňová

Plant Sci· December 2022

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Interactive effects of UV radiation and water deficit on production characteristics in upland grassland and their estimation by proximity sensing.
Petr Holub, Karel Klem, Barbora Veselá, Kateřina Surá, Otmar Urban

Ecol Evol· September 2022

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