Publications by authors named "Hongkui Zeng"

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Volumetric Ca Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy

May 2019

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Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans.
Christian Lüscher, Valentina Emiliani, Nita Farahany, Aryn Gittis, Viviana Gradinaru, Hongkui Zeng

Nat Neurosci· December 2025

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Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks.
Quan Jiang, Ling-Xiao Shao, Shenqin Yao, Neil K Savalia, Amelia D Gilbert, Hongkui Zeng

Cell· December 2025

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Transcriptomic and spatial organization of telencephalic GABAergic neurons.
Cindy T J van Velthoven, Yuan Gao, Michael Kunst, Changkyu Lee, Delissa McMillen, Hongkui Zeng

Nature· November 2025

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Continuous cell-type diversification in mouse visual cortex development.
Yuan Gao, Cindy T J van Velthoven, Changkyu Lee, Emma D Thomas, Rémi Mathieu, Hongkui Zeng

Nature· November 2025

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The new frontier in understanding human and mammalian brain development.
Tomasz J Nowakowski, Patricia R Nano, Katherine S Matho, Xiaoyin Chen, Emily K Corrigan, Hongkui Zeng

Nature· November 2025

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Data-driven fine-grained region discovery in the mouse brain with transformers.
Alex J Lee, Alma Dubuc, Michael Kunst, Shenqin Yao, Nicholas Lusk, Hongkui Zeng

Nat Commun· October 2025

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epDevAtlas: mapping GABAergic cells and microglia in the early postnatal mouse brain.
Josephine K Liwang, Fae N Kronman, Hyun-Jae Pi, Yuan-Ting Wu, Daniel J Vanselow, Hongkui Zeng

Nat Commun· October 2025

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Environmental Novelty Modulates Rapid Cortical Plasticity During Navigation.
Alexander Attinger, Antonia Drinnenberg, Can Dong, Charu Ramakrishnan, La'Akea Siverts, Hongkui Zeng

bioRxiv· October 2025

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Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals.
Simon Haziza, Radosław Chrapkiewicz, Yanping Zhang, Vasily Kruzhilin, Jane Li, Hongkui Zeng

Cell· September 2025

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The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales.
Kaitlin M Stouffer, Xiaoyin Chen, Hongkui Zeng, Benjamin Charlier, Laurent Younes

Commun Biol· September 2025

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Cholinergic neuronal activity promotes diffuse midline glioma growth through muscarinic signaling.
Richard Drexler, Antonia Drinnenberg, Avishai Gavish, Belgin Yalçin, Kiarash Shamardani, Hongkui Zeng

Cell· August 2025

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Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals.
Simon Haziza, Radosław Chrapkiewicz, Yanping Zhang, Vasily Kruzhilin, Jane Li, Hongkui Zeng

Cell· August 2025

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MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics.
Naomi Martin, Paul Olsen, Jacob Quon, Jazmin Campos, Nasmil Valera Cuevas, Hongkui Zeng

bioRxiv· July 2025

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Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque.
Emily Kussick, Nelson Johansen, Naz Taskin, Ananya Chowdhury, Meagan A Quinlan, Hongkui Zeng

Cell Rep· June 2025

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Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits.
Avery C Hunker, Morgan E Wirthlin, Gursajan Gill, Nelson J Johansen, Marcus Hooper, Hongkui Zeng

Neuron· May 2025

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A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types.
Yoav Ben-Simon, Marcus Hooper, Sujatha Narayan, Tanya L Daigle, Deepanjali Dwivedi, Hongkui Zeng

Cell· May 2025

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Integrated Classification of Cortical Cells and Quantitative Projectomic Mapping Unveil Organizational Principles of Brain-Wide Connectomes at Single Cell Level.
Yun Wang, Hsien-Chi Kuo, Xiuli Kuang, Shenqin Yao, Phil Lesnar, Hongkui Zeng

bioRxiv· May 2025

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Connectivity of single neurons classifies cell subtypes in mouse brains.
Lijuan Liu, Zhixi Yun, Linus Manubens-Gil, Hanbo Chen, Feng Xiong, Hongkui Zeng

Nat Methods· April 2025

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Integrating multimodal data to understand cortical circuit architecture and function.
Anton Arkhipov, Nuno da Costa, Saskia de Vries, Trygve Bakken, Corbett Bennett, Hongkui Zeng

Nat Neurosci· April 2025

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Connectomics of predicted Sst transcriptomic types in mouse visual cortex.
Clare R Gamlin, Casey M Schneider-Mizell, Matthew Mallory, Leila Elabbady, Nathan Gouwens, Hongkui Zeng

Nature· April 2025

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Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice.
Kelly Jin, Zizhen Yao, Cindy T J van Velthoven, Eitan S Kaplan, Katie Glattfelder, Hongkui Zeng

Nature· February 2025

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Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex.
Caroline A McLachlan, David G Lee, Osung Kwon, Kevin M Delgado, Nikita Manjrekar, Hongkui Zeng

Cell Rep· January 2025

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The BRAIN initiative: a pioneering program on the precipice.
Cory T Miller, Xiaoke Chen, Zoe R Donaldson, Bianca Jones Marlin, Doris Y Tsao, Hongkui Zeng

Nat Neurosci· December 2024

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Neuronal diversity and stereotypy at multiple scales through whole brain morphometry.
Yufeng Liu, Shengdian Jiang, Yingxin Li, Sujun Zhao, Zhixi Yun, Hongkui Zeng

Nat Commun· November 2024

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Continuous cell type diversification throughout the embryonic and postnatal mouse visual cortex development.
Yuan Gao, Cindy T J van Velthoven, Changkyu Lee, Emma D Thomas, Darren Bertagnolli, Hongkui Zeng

bioRxiv· October 2024

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