Publications by authors named "Howard Gamper"

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Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing.
Sepideh Tavakoli, Mohammad Nabizadeh, Amr Makhamreh, Howard Gamper, Caroline A McCormick, Neda K Rezapour, Ya-Ming Hou, Meni Wanunu, Sara H Rouhanifard

Nat Commun· January 2023

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Enzymes in high-throughput RNA sequencing: Applications and challenges.
Yuko Nakano, Howard Gamper, Ya-Ming Hou

Methods Enzymol· December 2025

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An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting.
Evelyn M Kimbrough, Ha An Nguyen, Haixing Li, Jacob M Mattingly, Nevette A Bailey, Howard Gamper

Nat Commun· August 2025

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Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess epitranscriptome plasticity in a neuronal cell line.
Oleksandra Fanari, Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Howard Gamper

Cell Syst· April 2025

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Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes.
Yuko Nakano, Howard Gamper, Henri McGuigan, Sunita Maharjan, Jiatong Li

Nat Commun· January 2025

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Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity.
Oleksandra Fanari, Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Howard Gamper

bioRxiv· November 2024

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Post-transcriptional methylation of mitochondrial-tRNA differentially contributes to mitochondrial pathology.
Sunita Maharjan, Howard Gamper, Yuka Yamaki, Thomas Christian, Robert Y Henley

Nat Commun· October 2024

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Nanopore signal deviations from pseudouridine modifications in RNA are sequence-specific: quantification requires dedicated synthetic controls.
Amr Makhamreh, Sepideh Tavakoli, Ali Fallahi, Xinqi Kang, Howard Gamper

Sci Rep· September 2024

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Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores.
Srilahari Namani, Kyril Kavetsky, Chih-Yuan Lin, Sunita Maharjan, Howard B Gamper

ACS Nano· July 2024

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Post-Transcriptional Methylation of Mitochondrial-tRNA Differentially Contributes to Mitochondrial Pathology.
Sunita Maharjan, Howard Gamper, Yuka Yamaki, Robert Y Henley, Nan-Sheng Li

bioRxiv· December 2023

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Genome-Wide Profiling of tRNA Using an Unexplored Reverse Transcriptase with High Processivity.
Yuko Nakano, Howard Gamper, Henri McGuigan, Sunita Maharjan, Zhiyi Sun

bioRxiv· December 2023

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Enzymatic synthesis of RNA standards for mapping and quantifying RNA modifications in sequencing analysis.
Howard Gamper, Caroline McCormick, Amr Makhamreh, Meni Wanunu, Sara H Rouhanifard

Methods Enzymol· November 2023

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Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation.
Yunlong Li, Soneya Majumdar, Ryan Treen, Manjuli R Sharma, Jamie Corro, Howard B Gamper

Proc Natl Acad Sci U S A· May 2023

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Preparation of an Enriched tRNA Fraction for Arginylation by Expression in E. coli.
Irem Avcilar-Kucukgoze, Howard Gamper, Ya-Ming Hou, Anna S Kashina

Methods Mol Biol· April 2023

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Synthesis of Stably Charged Arg-tRNA for Structural Analysis.
Yuka Yamaki, Howard Gamper, Ya-Ming Hou

Methods Mol Biol· April 2023

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Genome Expansion by tRNA +1 Frameshifting at Quadruplet Codons.
Howard Gamper, Isao Masuda, Ya-Ming Hou

J Mol Biol· April 2022

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Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis.
Zhicheng Cui, Xiaojun Li, Joonyoung Shin, Howard Gamper, Ya-Ming Hou

Nat Commun· January 2022

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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Christine E Carbone, Anna B Loveland, Howard B Gamper, Ya-Ming Hou, Gabriel Demo

Nat Commun· December 2021

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Twice exploration of tRNA +1 frameshifting in an elongation cycle of protein synthesis.
Howard Gamper, Yujia Mao, Isao Masuda, Henri McGuigan, Gregor Blaha

Nucleic Acids Res· September 2021

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Loss of -methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression.
Isao Masuda, Jae-Yeon Hwang, Thomas Christian, Sunita Maharjan, Fuad Mohammad, Howard Gamper

Elife· August 2021

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Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation.
Gabriel Demo, Howard B Gamper, Anna B Loveland, Isao Masuda, Christine E Carbone

Nat Commun· July 2021

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Insights into genome recoding from the mechanism of a classic +1-frameshifting tRNA.
Howard Gamper, Haixing Li, Isao Masuda, D Miklos Robkis, Thomas Christian

Nat Commun· January 2021

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Purification and Use of tRNA for Enzymatic Post-translational Addition of Amino Acids to Proteins.
Irem Avcilar-Kucukgoze, Howard Gamper, Ya-Ming Hou, Anna Kashina

STAR Protoc· December 2020

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A Label-Free Assay for Aminoacylation of tRNA.
Howard Gamper, Ya-Ming Hou

Genes (Basel)· October 2020

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tRNA-Derived Fragments Can Serve as Arginine Donors for Protein Arginylation.
Irem Avcilar-Kucukgoze, Howard Gamper, Christine Polte, Zoya Ignatova, Ralph Kraetzner

Cell Chem Biol· July 2020

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