Publications by authors named "Itsik Pe'er"

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Transcriptomic Plasticity is a Hallmark of Metastatic Pancreatic Cancer.
Alejandro Jiménez-Sánchez, Sitara Persad, Akimasa Hayashi, Shigeaki Umeda, Roshan Sharma, Itsik Pe'er, Dana Pe'er

Cancer Res· December 2025

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Distributional bias compromises leave-one-out cross-validation.
George I Austin, Itsik Pe'er, Tal Korem

Sci Adv· November 2025

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Comparative metagenomics using pan-metagenomic graphs.
Izaak Coleman, Natalya Mametyarova, Andrey Zaznaev, Peiwen Cai, Lisa Yu, Itsik Pe'er

bioRxiv· November 2025

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Identification of Sample Processing Errors in Microbiome Studies Using Host Genetic Profiles.
Julia Urban, Aya Brown Kav, William F Kindschuh, Heekuk Park, Raiyan R Khan, Itsik Pe'er

bioRxiv· September 2025

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Differential Predictability of Preterm Birth Types: Strong Signals for Indicated Cases versus Limited Success in Spontaneous Preterm Birth.
Yun Chao Lin, Andrea Clark-Sevilla, Mahdi A Loodaricheh, Itsik Pe'er, Anita Raja

medRxiv· July 2025

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Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models.
George I Austin, Aya Brown Kav, Shahd ElNaggar, Heekuk Park, Jana Biermann, Itsik Pe'er

Nat Microbiol· April 2025

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Genetic Risk and First-Trimester Cardiovascular Health Predict Hypertensive Disorders of Pregnancy in Nulliparous Women.
Vineetha Mathew, Raiyan R Khan, Amanda R Jowell, Qi Yan, Itsik Pe'er

J Am Coll Cardiol· April 2025

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Distributional bias compromises leave-one-out cross-validation.
George I Austin, Itsik Pe'er, Tal Korem

ArXiv· March 2025

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A comprehensive and bias-free machine learning approach for risk prediction of preeclampsia with severe features in a nulliparous study cohort.
Yun C Lin, Daniel Mallia, Andrea O Clark-Sevilla, Adam Catto, Alisa Leshchenko, Itsik Pe'er

BMC Pregnancy Childbirth· December 2024

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A Scoping Review of Preterm Birth Risk Factors.
Irene D Tang, Daniel Mallia, Qi Yan, Itsik Pe'er, Anita Raja

Am J Perinatol· May 2024

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Genetic polymorphisms associated with adverse pregnancy outcomes in nulliparas.
Raiyan R Khan, Rafael F Guerrero, Ronald J Wapner, Matthew W Hahn, Anita Raja, Itsik Pe'er

Sci Rep· May 2024

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Diving into CDC pregnancy data in the United States: longitudinal study and interactive application.
Andrea O Clark-Sevilla, Yun C Lin, Arnav Saxena, Qi Yan, Ronald Wapner, Itsik Pe'er

JAMIA Open· April 2024

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Current status of artificial intelligence methods for skin cancer survival analysis: a scoping review.
Celine M Schreidah, Emily R Gordon, Oluwaseyi Adeuyan, Caroline Chen, Brigit A Lapolla, Itsik Pe'er

Front Med (Lausanne)· April 2024

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Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.
George I Austin, Heekuk Park, Yoli Meydan, Dwayne Seeram, Tanya Sezin, Itsik Pe'er

Nat Biotechnol· December 2023

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SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.
Sitara Persad, Zi-Ning Choo, Christine Dien, Noor Sohail, Ignas Masilionis, Itsik Pe'er, Dana Pe'er

Nat Biotechnol· December 2023

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Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.
Qi Yan, Rafael F Guerrero, Raiyan R Khan, Andy A Surujnarine, Ronald J Wapner, Itsik Pe'er

Genetics· October 2023

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Scoping review of genetic databases for rare dermatologic diseases: Opportunity for artificial intelligence and machine learning.
Celine M Schreidah, George Bingham Reynolds, Lauren M Fahmy, Richard D Carvajal, Maarten H Vermeer, Itsik Pe'er

JAAD Int· September 2023

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Polygenic prediction of preeclampsia and gestational hypertension.
Michael C Honigberg, Buu Truong, Raiyan R Khan, Brenda Xiao, Laxmi Bhatta, Itsik Pe'er

Nat Med· June 2023

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Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.
Qi Yan, Rafael F Guerrero, Raiyan R Khan, Andy A Surujnarine, Ronald J Wapner, Itsik Pe'er

medRxiv· June 2023

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A Comprehensive and Bias-Free Machine Learning Approach for Risk Prediction of Preeclampsia with Severe Features in a Nulliparous Study Cohort.
Yun Lin, Daniel Mallia, Andrea Clark-Sevilla, Adam Catto, Alisa Leshchenko, Itsik Pe'er

Res Sq· April 2023

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Special Issue: RECOMB 2022, Part 2.
Itsik Pe'er

J Comput Biol· December 2022

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An Approximate Bayesian Computation Approach for Modeling Genome Rearrangements.
Asher Moshe, Elya Wygoda, Noa Ecker, Gil Loewenthal, Oren Avram, Itsik Pe'er

Mol Biol Evol· November 2022

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Special Issue: RECOMB 2022, Part 1.
Itsik Pe'er

J Comput Biol· November 2022

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MiSDEED: a synthetic data engine for microbiome study power analysis and study design.
Philippe Chlenski, Melody Hsu, Itsik Pe'er

Bioinform Adv· June 2022

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Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates.
Tyler A Joseph, Philippe Chlenski, Aviya Litman, Tal Korem, Itsik Pe'er

Genome Res· March 2022

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