Publications by authors named "Jacques Colinge"

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Detection of soluble biomarkers of pancreatic cancer in endoscopic ultrasound-guided fine-needle aspiration samples.
Régis Souche, Guillaume Tosato, Benjamin Rivière, Jean-Christophe Valats, Antoine Debourdeau, Nicolas Flori, Didier Pourquier, Jean-Michel Fabre, Eric Assenat, Jacques Colinge

Endoscopy· May 2022

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Post-transcriptional modifications integration for ligand-receptor cellular network inference.
Pierre Giroux, Morgan Maillard, Jacques Colinge

Mol Cell Proteomics· December 2025

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Progastrin Promotes Colorectal Cancer Stem Cell-Like Properties via the Receptor PZR.
Julie Nguyen, Marie Lafitte, Maud Barbery, Kevin Espie, Maya Jeitany, Jacques Colinge

Adv Sci (Weinh)· October 2025

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The transcription factor RIP140 regulates interferon γ signaling in breast cancer.
Stéphan Jalaguier, Axel Kuehn, Chloé Petitpas, Arnaud Dulom, Rémy Jacquemont, Jacques Colinge

Int J Cancer· July 2025

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Testing and overcoming the limitations of modular response analysis.
Jean-Pierre Borg, Jacques Colinge, Patrice Ravel

Brief Bioinform· March 2025

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ATR inhibition potentiates FOLFIRINOX cytotoxic effect in models of pancreatic ductal adenocarcinoma by remodelling the tumour microenvironment.
Marine Bruciamacchie, Véronique Garambois, Nadia Vie, Thomas Bessede, Henri-Alexandre Michaud, Jacques Colinge

Br J Cancer· February 2025

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Prediction of response to promising first-line chemotherapy in ovarian cancer patients with residual peritoneal tumors: practical biomarkers and robust multiplex models.
Reika Kawabata-Iwakawa, Norihiro Iwasa, Kenichi Satoh, Jacques Colinge, Muneaki Shimada

Int J Clin Oncol· September 2024

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Enabling population protein dynamics through Bayesian modeling.
Sylvain Lehmann, Jérôme Vialaret, Audrey Gabelle, Luc Bauchet, Jean-Philippe Villemin, Jacques Colinge

Bioinformatics· August 2024

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Modeling the Simultaneous Dynamics of Proteins in Blood Plasma and the Cerebrospinal Fluid in Human .
Pierre Giroux, Jérôme Vialaret, Jana Kindermans, Audrey Gabelle, Luc Bauchet, Jacques Colinge

J Proteome Res· July 2024

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Farnesyltransferase inhibition overcomes oncogene-addicted non-small cell lung cancer adaptive resistance to targeted therapies.
Sarah Figarol, Célia Delahaye, Rémi Gence, Aurélia Doussine, Juan Pablo Cerapio, Jacques Colinge

Nat Commun· June 2024

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Cancer-associated fibroblast spatial heterogeneity and expression in the tumor microenvironment modulate TGF-β activity and CD8 T-cell infiltration in breast cancer.
Chikako Kanno Honda, Sasagu Kurozumi, Takaaki Fujii, Didier Pourquier, Lakhdar Khellaf, Jacques Colinge

Theranostics· March 2024

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Circulating DNA reveals a specific and higher fragmentation of the Y chromosome.
Alain R Thierry, Cynthia Sanchez, Jacques Colinge, Ekaterina Pisareva

Hum Genet· November 2023

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Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR.
Jean-Philippe Villemin, Laia Bassaganyas, Didier Pourquier, Florence Boissière, Simon Cabello-Aguilar, Jacques Colinge

Nucleic Acids Res· May 2023

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Design and selection of optimal ErbB-targeting bispecific antibodies in pancreatic cancer.
Emilia Rabia, Véronique Garambois, Christine Dhommée, Christel Larbouret, Laurie Lajoie, Jacques Colinge

Front Immunol· May 2023

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Modular response analysis reformulated as a multilinear regression problem.
Jean-Pierre Borg, Jacques Colinge, Patrice Ravel

Bioinformatics· April 2023

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FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species.
Lena M Sauer, Rodrigo Canovas, Daniel Roche, Hosam Shams-Eldin, Patrice Ravel, Jacques Colinge

Malar J· January 2023

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The landscape of cancer-associated fibroblasts in colorectal cancer liver metastases.
Ambre Giguelay, Evgenia Turtoi, Lakhdar Khelaf, Guillaume Tosato, Ikrame Dadi, Jacques Colinge

Theranostics· November 2022

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Mechanical signatures of human colon cancers.
Evelyne Lopez-Crapez, Luca Costa, Guillaume Tosato, Jeanne Ramos, Thibault Mazard, Jacques Colinge

Sci Rep· July 2022

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Application of modular response analysis to medium- to large-size biological systems.
Meriem Mekedem, Patrice Ravel, Jacques Colinge

PLoS Comput Biol· April 2022

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Mechanisms underlying the cooperation between loss of epithelial polarity and Notch signaling during neoplastic growth in Drosophila.
Rémi Logeay, Charles Géminard, Patrice Lassus, Miriam Rodríguez-Vázquez, Diala Kantar, Jacques Colinge

Development· February 2022

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The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling.
Melissa Alame, Emmanuel Cornillot, Valère Cacheux, Valérie Rigau, Valérie Costes-Martineau, Jacques Colinge

Theranostics· July 2021

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Transcriptomic and genomic heterogeneity in blastic plasmacytoid dendritic cell neoplasms: from ontogeny to oncogenesis.
Florian Renosi, Anne Roggy, Ambre Giguelay, Lou Soret, Pierre-Julien Viailly, Jacques Colinge

Blood Adv· March 2021

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MAGI1 inhibits the AMOTL2/p38 stress pathway and prevents luminal breast tumorigenesis.
Diala Kantar, Emilie Bousquet Mur, Maicol Mancini, Vera Slaninova, Yezza Ben Salah, Jacques Colinge

Sci Rep· March 2021

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An R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk.
Gabriel Jimenez-Dominguez, Patrice Ravel, Stéphan Jalaguier, Vincent Cavaillès, Jacques Colinge

Sci Rep· March 2021

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Machine Learning-Assisted Evaluation of Circulating DNA Quantitative Analysis for Cancer Screening.
Rita Tanos, Guillaume Tosato, Amaelle Otandault, Zahra Al Amir Dache, Laurence Pique Lasorsa, Jacques Colinge

Adv Sci (Weinh)· September 2020

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