Publications by authors named "James A Fellows Yates"

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The evolution and changing ecology of the African hominid oral microbiome.
James A Fellows Yates, Irina M Velsko, Franziska Aron, Cosimo Posth, Courtney A Hofman, Rita M Austin, Cody E Parker, Allison E Mann, Kathrin Nägele, Kathryn Weedman Arthur

Proc Natl Acad Sci U S A· May 2021

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Empowering bioinformatics communities with Nextflow and nf-core.
Björn E Langer, Andreia Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, James A Fellows Yates

Genome Biol· July 2025

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Ancient DNA data hold insights into past organisms and ecosystems - handle them with more care.
Anders Bergström, James A Fellows Yates, Christina Warinner

Nature· December 2024

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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT.
Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, James A Fellows Yates

F1000Res· September 2024

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Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic.
Martin Klapper, Alexander Hübner, Anan Ibrahim, Ina Wasmuth, Maxime Borry, James A Fellows Yates

Science· May 2023

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Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species.
Markella Moraitou, Adrian Forsythe, James A Fellows Yates, Jaelle C Brealey, Christina Warinner

Mol Biol Evol· December 2022

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Ancient Metagenomic Studies: Considerations for the Wider Scientific Community.
Clio Der Sarkissian, Irina M Velsko, Anna K Fotakis, Åshild J Vågene, Alexander Hübner, James A Fellows Yates

mSystems· December 2021

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Reply to Ben-Dor et al.: Oral bacteria of Neanderthals and modern humans exhibit evidence of starch adaptation.
Christina Warinner, Irina M Velsko, James A Fellows Yates

Proc Natl Acad Sci U S A· September 2021

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Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.
James A Fellows Yates, Thiseas C Lamnidis, Maxime Borry, Aida Andrades Valtueña, Zandra Fagernäs

PeerJ· March 2021

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Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
James A Fellows Yates, Aida Andrades Valtueña, Åshild J Vågene, Becky Cribdon, Irina M Velsko

Sci Data· January 2021

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Micro Methods for Megafauna: Novel Approaches to Late Quaternary Extinctions and Their Contributions to Faunal Conservation in the Anthropocene.
Jillian A Swift, Michael Bunce, Joe Dortch, Kristina Douglass, J Tyler Faith, James A Fellows Yates

Bioscience· November 2019

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Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage.
Irina M Velsko, James A Fellows Yates, Franziska Aron, Richard W Hagan, Laurent A F Frantz

Microbiome· July 2019

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Differential preservation of endogenous human and microbial DNA in dental calculus and dentin.
Allison E Mann, Susanna Sabin, Kirsten Ziesemer, Åshild J Vågene, Hannes Schroeder, James A Fellows Yates

Sci Rep· June 2018

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Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes.
James A Fellows Yates, Dorothée G Drucker, Ella Reiter, Simon Heumos, Frido Welker

Sci Rep· December 2017

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A Robust Framework for Microbial Archaeology.
Christina Warinner, Alexander Herbig, Allison Mann, James A Fellows Yates, Clemens L Weiß

Annu Rev Genomics Hum Genet· August 2017

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