Publications by authors named "Jan van der Meer"

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Phosphite as an engineered niche for in a synthetic soil bacterial community.
Clara Bailey, Philip Gwyther, Senka Čaušević, Brandon L Greene, Jan Roelof van der Meer

mSystems· September 2025

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Orchestrated long-distance gene activation by a ParB-like BisD-CTP DNA clamp in low-frequency transfer competence development in Pseudomonas putida.
Hammam Antar, Nicolas Carraro, Hanna Budny, Stephan Gruber, Jan Roelof van der Meer

Nucleic Acids Res· August 2025

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Coordinates the Expression of two Manganese Oxidases and Optimizes Manganese Oxide Precipitation in Response to Aqueous Mn(II).
Gaitan Gehin, Nicolas Carraro, Konane Gurfield, Jan Roelof van der Meer, Jasquelin Peña

Environ Sci Technol· July 2025

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Population-level control of two manganese oxidases expands the niche for bacterial manganese biomineralization.
Gaitan Gehin, Nicolas Carraro, Jan Roelof van der Meer, Jasquelin Peña

NPJ Biofilms Microbiomes· March 2025

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Duke-ISCVID Criteria in Patients With Negative Blood Cultures.
Thomas W van der Vaart, Vance G Fowler, Jan T M van der Meer

Clin Infect Dis· February 2025

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Soil microbiome interventions for carbon sequestration and climate mitigation.
Gwyn A Beattie, Anna Edlund, Nwadiuto Esiobu, Jack Gilbert, Mette Haubjerg Nicolaisen, Jan Roelof van der Meer

mSystems· January 2025

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Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil.
Senka Causevic, Janko Tackmann, Vladimir Sentchilo, Lukas Malfertheiner, Christian von Mering, Jan Roelof van der Meer

ISME J· January 2025

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Acute kidney injury in Staphylococcus aureus bacteraemia: a recurrent events analysis.
David T P Buis, Thomas W van der Vaart, Asna Mohan, Jan M Prins, Jan T M van der Meer

Clin Microbiol Infect· October 2024

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Inferring bacterial interspecific interactions from microcolony growth expansion.
Tania Miguel Trabajo, Isaline Guex, Manupriyam Dubey, Elvire Sarton-Lohéac, Helena Todorov, Jan Roelof van der Meer

Microlife· October 2024

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Bacttle: a microbiology educational board game for lay public and schools.
Tania Miguel Trabajo, Eavan Dorcey, Jan Roelof van der Meer

J Microbiol Biol Educ· August 2024

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Fragmented micro-growth habitats present opportunities for alternative competitive outcomes.
Maxime Batsch, Isaline Guex, Helena Todorov, Clara M Heiman, Jordan Vacheron, Jan Roelof van der Meer

Nat Commun· August 2024

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The Utility of Risk Factors to Define Complicated Staphylococcus aureus Bacteremia in a Setting With Low Methicillin-Resistant S. aureus Prevalence.
Thomas W van der Vaart, Jan M Prins, Abraham Goorhuis, Bregtje A Lemkes, Kim C E Sigaloff, Jan T M van der Meer

Clin Infect Dis· April 2024

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External Validation of the 2023 Duke-International Society for Cardiovascular Infectious Diseases Diagnostic Criteria for Infective Endocarditis.
Thomas W van der Vaart, Patrick M M Bossuyt, David T Durack, Larry M Baddour, Arnold S Bayer, Jan T M van der Meer

Clin Infect Dis· April 2024

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Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions.
Senka Čaušević, Manupriyam Dubey, Marian Morales, Guillem Salazar, Vladimir Sentchilo, Jan Roelof van der Meer

Nat Commun· March 2024

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Diversity and evolution of an abundant ICE family of integrative and conjugative elements in .
Valentina Benigno, Nicolas Carraro, Garance Sarton-Lohéac, Sara Romano-Bertrand, Dominique S Blanc, Jan Roelof van der Meer

mSphere· December 2023

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From microbiome composition to functional engineering, one step at a time.
Sebastian Dan Burz, Senka Causevic, Alma Dal Co, Marija Dmitrijeva, Philipp Engel, Jan Roelof van der Meer

Microbiol Mol Biol Rev· December 2023

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Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere.
Daniel Garrido-Sanz, Senka Čaušević, Jordan Vacheron, Clara M Heiman, Vladimir Sentchilo, Jan Roelof van der Meer

Microbiome· September 2023

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The 2023 Duke-International Society for Cardiovascular Infectious Diseases Criteria for Infective Endocarditis: Updating the Modified Duke Criteria.
Vance G Fowler, David T Durack, Christine Selton-Suty, Eugene Athan, Arnold S Bayer, Jan T M van der Meer

Clin Infect Dis· August 2023

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Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding.
Isaline Guex, Christian Mazza, Manupriyam Dubey, Maxime Batsch, Renyi Li, Jan Roelof van der Meer

PLoS Comput Biol· August 2023

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Positive Impact of [18F]FDG-PET/CT on Mortality in Patients With Staphylococcus aureus Bacteremia Explained by Immortal Time Bias.
Thomas W van der Vaart, Jan M Prins, Cornelis H van Werkhoven, Thijs Ten Doesschate, Robin Soetekouw, Jan T M van der Meer

Clin Infect Dis· July 2023

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Value of diagnosing immunological phenomena in patients with suspected endocarditis.
Thomas W van der Vaart, Luca L Heerschop, Berto J Bouma, Wieke Freudenburg, Marc J M Bonten, Jan T M van der Meer

Infection· June 2023

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Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2.
Marian Morales, Vladimir Sentchilo, Nicolas Carraro, Senka Causevic, Dominique Vuarambon, Jan R van der Meer

mSystems· April 2023

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STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images.
Helena Todorov, Tania Miguel Trabajo, Jan Roelof van der Meer

mSphere· April 2023

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Characterization of an atypical but widespread type IV secretion system for transfer of the integrative and conjugative element (ICEclc) in Pseudomonas putida.
Andrea Daveri, Valentina Benigno, Jan Roelof van der Meer

Nucleic Acids Res· March 2023

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All-Cause and Infection-Related Mortality in Bacteremia, a Multicenter Prospective Cohort Study.
Thomas W van der Vaart, Jan M Prins, Robin Soetekouw, Gitte van Twillert, Jan Veenstra, Jan T M van der Meer

Open Forum Infect Dis· December 2022

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