Publications by authors named "Jiri Filipovic"

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Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials.
David Herreros, Roy R Lederman, James Krieger, Amaya Jiménez-Moreno, Marta Martínez, David Myška, David Strelak, Jiri Filipovic, Ivet Bahar, Jose Maria Carazo

IUCrJ· November 2021

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pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support.
Ondrej Vavra, Jakub Beranek, Jan Stourac, Martin Surkovsky, Jiri Filipovic

Bioinformatics· August 2023

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CaverDock: A Novel Method for the Fast Analysis of Ligand Transport.
Jiri Filipovic, Ondrej Vavra, Jan Plhak, David Bednar, Sergio M Marques

IEEE/ACM Trans Comput Biol Bioinform· December 2021

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Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures.
Jana Hozzová, Jiří Filipovič, Amin Nezarat, Jaroslav Ol'ha, Filip Petrovič

Data Brief· December 2021

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Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.
David Strelak, Amaya Jiménez-Moreno, José L Vilas, Erney Ramírez-Aportela, Ruben Sánchez-García, Jiri Filipovic

Molecules· October 2021

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Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods.
Carlos Oscar S Sorzano, Amaya Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Marta Martínez, Jiri Filipovic

Methods Mol Biol· August 2021

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Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning.
Gaspar P Pinto, Ondrej Vavra, Sergio M Marques, Jiri Filipovic, David Bednar

Comput Struct Biotechnol J· May 2021

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Simulation of Ligand Transport in Receptors Using CaverDock.
Jana Hozzová, Ondřej Vávra, David Bednář, Jiří Filipovič

Methods Mol Biol· April 2021

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CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.
Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sergio M Marques

Bioinformatics· December 2019

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Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock.
Gaspar P Pinto, Ondrej Vavra, Jiri Filipovic, Jan Stourac, David Bednar

Front Chem· October 2019

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Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.
Jan Stourac, Ondrej Vavra, Piia Kokkonen, Jiri Filipovic, Gaspar Pinto

Nucleic Acids Res· July 2019

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