Publications by authors named "Jody Clements"

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A connectome and analysis of the adult central brain.
Louis K Scheffer, C Shan Xu, Michal Januszewski, Zhiyuan Lu, Shin-Ya Takemura, Kenneth J Hayworth, Gary B Huang, Kazunori Shinomiya, Jeremy Maitlin-Shepard, Stuart Berg

September 2020

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Sexual dimorphism in the complete connectome of the male central nervous system.
Stuart Berg, Isabella R Beckett, Marta Costa, Philipp Schlegel, Michał Januszewski, Jody Clements

bioRxiv· October 2025

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PEELing: an integrated and user-centric platform for spatially resolved proteomics data analysis.
Xi Peng, Jody Clements, Zuzhi Jiang, Shuo Han, Stephan Preibisch

Bioinformatics· August 2025

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Connectome-driven neural inventory of a complete visual system.
Aljoscha Nern, Frank Loesche, Shin-Ya Takemura, Laura E Burnett, Marisa Dreher, Jody Clements

Nature· May 2025

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Connectome-driven neural inventory of a complete visual system.
Aljoscha Nern, Frank Loesche, Shin-Ya Takemura, Laura E Burnett, Marisa Dreher, Jody Clements

bioRxiv· June 2024

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The cell-type-specific spatial organization of the anterior thalamic nuclei of the mouse brain.
Margarita Kapustina, Angela A Zhang, Jennifer Y J Tsai, Brianna N Bristow, Larissa Kraus, Jody Clements

Cell Rep· March 2024

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NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.
Jody Clements, Cristian Goina, Philip M Hubbard, Takashi Kawase, Donald J Olbris

BMC Bioinformatics· March 2024

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Sharp cell-type-identity changes differentiate the retrosplenial cortex from the neocortex.
Kaitlin E Sullivan, Larissa Kraus, Margarita Kapustina, Lihua Wang, Tara R Stach, Jody Clements

Cell Rep· March 2023

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Multidisciplinary prosthetic rehabilitation of an adult patient with cleidocranial dysplasia by using a rapid external distraction device: A clinical report.
Wainscott Hollis, Jody Clements, Jeff Brooks

J Prosthet Dent· February 2023

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A searchable image resource of GAL4 driver expression patterns with single neuron resolution.
Geoffrey W Meissner, Aljoscha Nern, Zachary Dorman, Gina M DePasquale, Kaitlyn Forster, Jody Clements

Elife· February 2023

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Neuronal cell types, projections, and spatial organization of the central amygdala.
Timothy P O'Leary, Rennie M Kendrick, Brianna N Bristow, Kaitlin E Sullivan, Lihua Wang, Jody Clements

iScience· December 2022

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Print: An open access tool for EM connectomics.
Stephen M Plaza, Jody Clements, Tom Dolafi, Lowell Umayam, Nicole N Neubarth

Front Neuroinform· July 2022

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Whole-cell organelle segmentation in volume electron microscopy.
Larissa Heinrich, Davis Bennett, David Ackerman, Woohyun Park, John Bogovic, Jody Clements

Nature· November 2021

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Spatially patterned excitatory neuron subtypes and projections of the claustrum.
Sarah R Erwin, Brianna N Bristow, Kaitlin E Sullivan, Rennie M Kendrick, Brian Marriott, Jody Clements

Elife· August 2021

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Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala.
Timothy P O'Leary, Kaitlin E Sullivan, Lihua Wang, Jody Clements, Andrew L Lemire

Elife· September 2020

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Estimating the power of sequence covariation for detecting conserved RNA structure.
Elena Rivas, Jody Clements, Sean R Eddy

Bioinformatics· May 2020

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The subiculum is a patchwork of discrete subregions.
Mark S Cembrowski, Lihua Wang, Andrew L Lemire, Monique Copeland, Salvatore F DiLisio, Jody Clements

Elife· October 2018

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Do denture processing techniques affect the mechanical properties of denture teeth?
Jody L Clements, Daranee Tantbirojn, Antheunis Versluis, David R Cagna

J Prosthet Dent· August 2018

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A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs.
Elena Rivas, Jody Clements, Sean R Eddy

Nat Methods· January 2017

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The Dfam database of repetitive DNA families.
Robert Hubley, Robert D Finn, Jody Clements, Sean R Eddy, Thomas A Jones

Nucleic Acids Res· January 2016

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HMMER web server: 2015 update.
Robert D Finn, Jody Clements, William Arndt, Benjamin L Miller, Travis J Wheeler

Nucleic Acids Res· July 2015

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Pfam: the protein families database.
Robert D Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y Eberhardt

Nucleic Acids Res· January 2014

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iPfam: a database of protein family and domain interactions found in the Protein Data Bank.
Robert D Finn, Benjamin L Miller, Jody Clements, Alex Bateman

Nucleic Acids Res· January 2014

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Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
Travis J Wheeler, Jody Clements, Robert D Finn

BMC Bioinformatics· January 2014

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Dfam: a database of repetitive DNA based on profile hidden Markov models.
Travis J Wheeler, Jody Clements, Sean R Eddy, Robert Hubley, Thomas A Jones

Nucleic Acids Res· January 2013

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