Publications by authors named "Jonathan Lynch"

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Did crop domestication change the fitness landscape of root response to soil mechanical impedance? An in silico analysis.
Harini Rangarajan, Jonathan P Lynch

Ann Bot· December 2025

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The microbial metabolite imidazole propionate modulates hypothalamic activity and stress-induced behaviors.
Gulistan Agirman, Michael N B Quicho, Kaden K Connelley, Xiaobei Zhang, Jonathan B Lynch

Cell Host Microbe· December 2025

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In silico analysis of the evolution of root phenotypes during maize domestication in Neolithic soils of Tehuacán.
Ivan Lopez-Valdivia, Miguel Vallebueno-Estrada, Harini Rangarajan, Kelly Swarts, Bruce F Benz, Jonathan P Lynch

New Phytol· October 2025

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Complex carbohydrate utilization by gut bacteria modulates host food consumption.
Kristie B Yu, Celine Son, Ezgi Özcan, Anisha Chandra, Jorge Paramo, Jonathan B Lynch

Nat Commun· September 2025

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Broad environmental adaptation is associated with root anatomical phenotypes in maize landraces: An in silico study.
Ivan Lopez-Valdivia, Harini Rangarajan, Miguel Vallebueno-Estrada, Jonathan P Lynch

Ann Bot· August 2025

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Bugs take the sting out.
Arren J Liu, Jonathan B Lynch

Cell Host Microbe· January 2025

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Cortical parenchyma wall width regulates root metabolic cost and maize performance under suboptimal water availability.
Jagdeep Singh Sidhu, Ivan Lopez-Valdivia, Christopher F Strock, Hannah M Schneider, Jonathan P Lynch

J Exp Bot· September 2024

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Integrating GWAS with a gene co-expression network better prioritizes candidate genes associated with root metaxylem phenes in maize.
Stephanie P Klein, Shawn M Kaeppler, Kathleen M Brown, Jonathan P Lynch

Plant Genome· September 2024

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Cortical cell size regulates root metabolic cost.
Jagdeep Singh Sidhu, Jonathan P Lynch

Plant J· June 2024

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Complex carbohydrate utilization by gut bacteria modulates host food preference.
Kristie B Yu, Celine Son, Anisha Chandra, Jorge Paramo, Anna Novoselov, Jonathan B Lynch

bioRxiv· February 2024

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Location: root architecture structures rhizosphere microbial associations.
Tania Galindo-Castañeda, Martin Hartmann, Jonathan P Lynch

J Exp Bot· January 2024

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A role for fermentation in aerobic conditions as revealed by computational analysis of maize root metabolism during growth by cell elongation.
Hilary Hunt, Stefan Leape, Jagdeep Singh Sidhu, Ishan Ajmera, Jonathan P Lynch

Plant J· December 2023

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Root phenotypes for improved nitrogen capture.
Jonathan P Lynch, Tania Galindo-Castañeda, Hannah M Schneider, Jagdeep Singh Sidhu, Harini Rangarajan

Plant Soil· October 2023

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Large root cortical cells and reduced cortical cell files improve growth under suboptimal nitrogen in silico.
Ivan Lopez-Valdivia, Xiyu Yang, Jonathan P Lynch

Plant Physiol· July 2023

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Toward understanding links between the microbiome and neurotransmitters.
Jonathan B Lynch, Elaine Y Hsiao

Ann N Y Acad Sci· June 2023

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Gut microbiota Turicibacter strains differentially modify bile acids and host lipids.
Jonathan B Lynch, Erika L Gonzalez, Kayli Choy, Kym F Faull, Talia Jewell

Nat Commun· June 2023

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RootSlice-A novel functional-structural model for root anatomical phenotypes.
Jagdeep Singh Sidhu, Ishan Ajmera, Sankalp Arya, Jonathan P Lynch

Plant Cell Environ· May 2023

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Transcription factor bHLH121 regulates root cortical aerenchyma formation in maize.
Hannah M Schneider, Vai S Lor, Xia Zhang, Patompong Saengwilai, Meredith T Hanlon, Jonathan P Lynch

Proc Natl Acad Sci U S A· March 2023

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Modeling root loss reveals impacts on nutrient uptake and crop development.
Ernst D Schäfer, Markus R Owen, Leah R Band, Etienne Farcot, Malcolm J Bennett, Jonathan P Lynch

Plant Physiol· November 2022

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evidence for the utility of parsimonious root phenotypes for improved vegetative growth and carbon sequestration under drought.
Ernst D Schäfer, Ishan Ajmera, Etienne Farcot, Markus R Owen, Leah R Band, Jonathan P Lynch

Front Plant Sci· November 2022

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Response of Southeast Asian rice root architecture and anatomy phenotypes to drought stress.
Jonaliza L Siangliw, Burin Thunnom, Mignon A Natividad, Marinell R Quintana, Dmytro Chebotarov, Jonathan P Lynch

Front Plant Sci· October 2022

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Root and xylem anatomy varies with root length, root order, soil depth and environment in intermediate wheatgrass (Kernza®) and alfalfa.
Corentin Clément, Hannah M Schneider, Dorte Bodin Dresbøll, Jonathan P Lynch, Kristian Thorup-Kristensen

Ann Bot· September 2022

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Root angle is controlled by in cereal crops employing an antigravitropic mechanism.
Riccardo Fusi, Serena Rosignoli, Haoyu Lou, Giuseppe Sangiorgi, Riccardo Bovina, Jonathan P Lynch

Proc Natl Acad Sci U S A· August 2022

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Many paths to one goal: Identifying integrated rice root phenotypes for diverse drought environments.
Jenna E Fonta, Phanchita Vejchasarn, Amelia Henry, Jonathan P Lynch, Kathleen M Brown

Front Plant Sci· August 2022

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Developmental Morphology and Anatomy Shed Light on Both Parallel and Convergent Evolution of the Umbellate Inflorescence in Monocots, Underlain by a New Variant of Metatopy.
Jesús Martínez-Gómez, Tara A M Atluri, Irving Jason Rose, Aaliyah J Holliday, Christopher F Strock, Jonathan P Lynch

Front Plant Sci· April 2022

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