Publications by authors named "Joseph Nesme"

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Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review.
Nasreen Hassoun-Kheir, Yoav Stabholz, Jan-Ulrich Kreft, Roberto de la Cruz, Jesús L Romalde, Joseph Nesme, Søren J Sørensen, Barth F Smets, David Graham, Mical Paul

Sci Total Environ· November 2020

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Unfolding the collective functional potential of a synergistic multispecies community through genotypic and phenotypic analyses.
Dana Ronin, Mads Frederik Hansen, Maximilian Lukas Flaig, Morten Kam Dahl Dueholm, Anders Ogechi Hostrup Daugberg, Joseph Nesme

Biofilm· December 2025

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Birmingham-group IncP-1 plasmids revisited: RP4, RP1 and RK2 are identical and their remnants can be detected in environmental isolates.
Vuong Van Hung Le, Zhuang Gong, Lorrie Maccario, Emma Bousquet, Boris Parra, Joseph Nesme

Microb Genom· March 2025

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A chromosome phased diploid genome assembly of African hunting dog (Lycaon pictus).
Sergei Kliver, Iva Kovacic, Sarah Mak, Mikkel-Holger S Sinding, Julia Stagegaard, Joseph Nesme

J Hered· January 2025

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Insights into the ecology of the infant gut plasmidome.
Wanli He, Jakob Russel, Franziska Klincke, Joseph Nesme, Søren Johannes Sørensen

Nat Commun· August 2024

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Single-cell RNA sequencing reveals plasmid constrains bacterial population heterogeneity and identifies a non-conjugating subpopulation.
Valentine Cyriaque, Rodrigo Ibarra-Chávez, Anna Kuchina, Georg Seelig, Joseph Nesme

Nat Commun· July 2024

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Characterization and Abundance of Plasmid-Dependent Alphatectivirus Bacteriophages.
Boris Parra, Veronika T Lutz, Lone Brøndsted, Javiera L Carmona, Alejandro Palomo, Joseph Nesme

Microb Ecol· June 2024

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Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition.
Xuanji Li, Asker Brejnrod, Urvish Trivedi, Jakob Russel, Jonathan Thorsen, Joseph Nesme

Microbiome· May 2024

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A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics.
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen

Microbiol Spectr· April 2024

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Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater.
Zhuofeng Yu, Qinqin Wang, Rafael Pinilla-Redondo, Jonas Stenløkke Madsen, Kamille Anna Dam Clasen, Joseph Nesme

Ecotoxicol Environ Saf· February 2024

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Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems.
Zhuofeng Yu, Wanli He, Franziska Klincke, Jonas Stenløkke Madsen, Witold Kot, Joseph Nesme

Environ Int· January 2024

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Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth.
Nan Yang, Henriette L Røder, Wisnu Adi Wicaksono, Birgit Wassermann, Jakob Russel, Joseph Nesme

ISME J· January 2024

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Draft genomes of seven isolates from Danish wastewater facilities belonging to , , , , and .
Lorrie Maccario, Ana F Silva, Joseph Nesme, Cristina I Amador, Søren J Sørensen

Microbiol Resour Announc· December 2023

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Hordeum vulgare differentiates its response to beneficial bacteria.
Yongming Duan, Min Han, Maja Grimm, Jasper Schierstaedt, Jafargholi Imani, Joseph Nesme

BMC Plant Biol· October 2023

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Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning.
Danesh Moradigaravand, Liguan Li, Arnaud Dechesne, Joseph Nesme, Roberto de la Cruz

Bioinformatics· July 2023

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Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes.
Nikola Major, Sven Jechalke, Joseph Nesme, Smiljana Goreta Ban, Marko Černe

Waste Manag· December 2022

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Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages.
Zhiming He, Boris Parra, Joseph Nesme, Barth F Smets, Arnaud Dechesne

Water Res· December 2022

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Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals.
Urška Zadel, Catarina Cruzeiro, Abilash Chakravarthy Raj Durai, Joseph Nesme, Robert May

Environ Pollut· November 2022

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A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media.
Inés Aguilar-Romero, Pieter van Dillewijn, Joseph Nesme, Søren J Sørensen, Rogelio Nogales

Sci Total Environ· August 2022

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Long-Term Fertilization Strategy Impacts -Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce.
Loreen Sommermann, Doreen Babin, Jan Helge Behr, Soumitra Paul Chowdhury, Martin Sandmann, Joseph Nesme

Microorganisms· August 2022

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Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community.
Nathalie N S E Henriksen, Mads Frederik Hansen, Heiko T Kiesewalter, Jakob Russel, Joseph Nesme

NPJ Biofilms Microbiomes· July 2022

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IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage.
Asmus K Olesen, Rafael Pinilla-Redondo, Mads F Hansen, Jakob Russel, Arnaud Dechesne, Joseph Nesme

Mol Ecol· March 2022

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Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?
Birgit Wolters, Kristin Hauschild, Khald Blau, Ines Mulder, Benjamin Justus Heyde, Joseph Nesme

Environ Microbiol· March 2022

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Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes.
Rafael Pinilla-Redondo, Asmus Kalckar Olesen, Jakob Russel, Lisbeth Elvira de Vries, Lisbeth Damkjær Christensen, Joseph Nesme

mBio· December 2021

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Comparative Genomics of Novel G3 Strains Isolated From the International Space Station and Description of sp. nov.
Nitin K Singh, Céline Lavire, Joseph Nesme, Ludovic Vial, Xavier Nesme

Front Microbiol· December 2021

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Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis.
Nan Yang, Joseph Nesme, Henriette Lyng Røder, Xuanji Li, Zhangli Zuo

NPJ Biofilms Microbiomes· November 2021

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