Publications by authors named "Joseph Paulson"

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Poor surgical outcomes following Paenibacillus infant infectious hydrocephalus.
Jessica E Ericson, Davis Natukwatsa, Peter Ssenyonga, Justin Onen, John Mugamba, Joseph N Paulson

J Neurosurg Pediatr· August 2025

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Poor Surgical Outcomes Following Infant Infectious Hydrocephalus.
Jessica E Ericson, Davis Natukwatsa, Peter Ssenyonga, Justin Onen, John Mugamba, Joseph N Paulson

medRxiv· May 2025

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Lubricating gel influence on vaginal microbiome sampling.
Daphna Amitai Komem, Rotem Hadar, Joseph Nathaniel Paulson, Yael Mordechai, Haig Alexander Eskandarian

Sci Rep· August 2024

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bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria.
Guillermo Guerrero-Egido, Adrian Pintado, Kevin M Bretscher, Luisa-Maria Arias-Giraldo, Joseph N Paulson

Nat Commun· March 2024

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Author Correction: Transcriptomic profiles and 5-year results from the randomized CLL14 study of venetoclax plus obinutuzumab versus chlorambucil plus obinutuzumab in chronic lymphocytic leukemia.
Othman Al-Sawaf, Can Zhang, Hyun Yong Jin, Sandra Robrecht, Yoonha Choi, Joseph N Paulson

Nat Commun· October 2023

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Neonatal Paenibacilliosis: Paenibacillus Infection as a Novel Cause of Sepsis in Term Neonates With High Risk of Sequelae in Uganda.
Jessica E Ericson, Kathy Burgoine, Elias Kumbakumba, Moses Ochora, Christine Hehnly, Joseph N Paulson

Clin Infect Dis· September 2023

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Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours.
Arash Nabbi, Pengbo Beck, Alberto Delaidelli, Derek A Oldridge, Sumedha Sudhaman, Joseph N Paulson

Genome Med· September 2023

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mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation.
Mercedeh Movassagh, Steven J Schiff, Joseph N Paulson

Bioinformatics· September 2023

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Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study.
Sarah U Morton, Christine Hehnly, Kathy Burgoine, Paddy Ssentongo, Jessica E Ericson, Joseph N Paulson

Lancet Microbe· August 2023

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Multimodal immunogenomic biomarker analysis of tumors from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab.
Arash Nabbi, Arnavaz Danesh, Osvaldo Espin-Garcia, Stephanie Pedersen, Johanna Wellum, Joseph N Paulson

Nat Cancer· April 2023

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Transcriptomic profiles and 5-year results from the randomized CLL14 study of venetoclax plus obinutuzumab versus chlorambucil plus obinutuzumab in chronic lymphocytic leukemia.
Othman Al-Sawaf, Can Zhang, Hyun Yong Jin, Sandra Robrecht, Yoonha Choi, Joseph N Paulson

Nat Commun· April 2023

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The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Marouen Ben Guebila, Tian Wang, Camila M Lopes-Ramos, Viola Fanfani, Des Weighill, Joseph N Paulson

Genome Biol· March 2023

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A tumor volume and performance status model to predict outcome before treatment in diffuse large B-cell lymphoma.
Catherine Thieblemont, Loic Chartier, Ulrich Dührsen, Umberto Vitolo, Sally F Barrington, Joseph N Paulson

Blood Adv· December 2022

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Type IV Pili Are a Critical Virulence Factor in Clinical Isolates of Paenibacillus thiaminolyticus.
Christine Hehnly, Aiqin Shi, Paddy Ssentongo, Lijun Zhang, Albert Isaacs, Joseph N Paulson

mBio· December 2022

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GameRank: R package for feature selection and construction.
Carsten Henneges, Joseph N Paulson

Bioinformatics· October 2022

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Patient-reported outcomes provide prognostic information for survival in patients with diffuse large B-cell lymphoma: Analysis of 1239 patients from the GOYA study.
Huang Huang, Asim Datye, Ming Fan, Andrea Knapp, Tina Nielsen, Joseph N Paulson

Cancer Med· September 2022

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Differential richness inference for 16S rRNA marker gene surveys.
M Senthil Kumar, Eric V Slud, Christine Hehnly, Lijun Zhang, James Broach, Joseph N Paulson

Genome Biol· August 2022

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mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis.
Mercedeh Movassagh, Sarah U Morton, Christine Hehnly, Jasmine Smith, Trang T Doan, Joseph N Paulson

BMC Genomics· June 2022

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Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.
Ben O Oyserman, Stalin Sarango Flores, Thom Griffioen, Xinya Pan, Elmar van der Wijk, Joseph N Paulson

Nat Commun· June 2022

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Cytomegalovirus infections in infants in Uganda: Newborn-mother pairs, neonates with sepsis, and infants with hydrocephalus.
Christine Hehnly, Paddy Ssentongo, Lisa M Bebell, Kathy Burgoine, Joel Bazira, Joseph N Paulson

Int J Infect Dis· May 2022

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Risk profiling of patients with relapsed/refractory diffuse large B-cell lymphoma by measuring circulating tumor DNA.
Alex F Herrera, Samuel Tracy, Brandon Croft, Stephen Opat, Jill Ray, Joseph N Paulson

Blood Adv· March 2022

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Prognostic mutational subtyping in de novo diffuse large B-cell lymphoma.
Eugene Kim, Yanwen Jiang, Tao Xu, Alexandra Bazeos, Andrea Knapp, Joseph N Paulson

BMC Cancer· March 2022

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TRAIL Score: A Simple Model to Predict Immunochemotherapy Tolerability in Patients With Diffuse Large B-Cell Lymphoma.
Will Harris, Edward J Bataillard, Yoonha Choi, Tarec C El-Galaly, Vaikunth Cuchelkar, Joseph N Paulson

JCO Clin Cancer Inform· January 2022

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AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite.
Giorgos Skoufos, Fatemeh Almodaresi, Mohsen Zakeri, Joseph N Paulson, Rob Patro

Genome Biol· January 2022

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