Publications by authors named "Kelly Thayer"

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Network Theory Analysis of Allosteric Drug-Rescue Mechanisms in the Tumor Suppressor Protein p53 Y220C Mutant.
Benjamin S Cowan, Kelly M Thayer

Int J Mol Sci· July 2025

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Structural and mechanistic diversity in p53-mediated regulation of organismal longevity across taxonomical orders.
Romani Osbourne, Kelly M Thayer

PLoS Comput Biol· May 2025

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MD Multi-Sector Selector: Recursive Extraction and Refinement of Molecular Dynamics Based Sectors Yields Two Sectors in p53 Tumor Suppressor Protein.
Christopher A Chiu, Sean Stetson, Kelly M Thayer

J Phys Chem B· April 2025

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Structural and mechanistic diversity in p53-mediated regulation of organismal longevity across taxonomical orders.
Romani Osbourne, Kelly M Thayer

bioRxiv· August 2024

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Navigating the complexity of p53-DNA binding: implications for cancer therapy.
Kelly M Thayer, Sean Stetson, Fernando Caballero, Christopher Chiu, In Sub Mark Han

Biophys Rev· August 2024

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The Albany Conversations Are Now the Next Generation Conversations: Albany @ Ruston.
Thomas C Bishop, Kelly M Thayer, Robert T Young

Biophys Rev· August 2024

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Reconnaissance of Allostery via the Restoration of Native p53 DNA-Binding Domain Dynamics in Y220C Mutant p53 Tumor Suppressor Protein.
In Sub M Han, Kelly M Thayer

ACS Omega· May 2024

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GNN Codon Adjacency Tunes Protein Translation.
Joyce Sun, Pete Hwang, Eric D Sakkas, Yancheng Zhou, Luis Perez, Kelly M Thayer

Int J Mol Sci· May 2024

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Molecular dynamics of mismatch detection-How MutS uses indirect readout to find errors in DNA.
Abhilash Jayaraj, Kelly M Thayer, David L Beveridge, Manju M Hingorani

Biophys J· August 2023

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Allosteric Signaling in PDZ Energetic Networks: Embedding Error Analysis.
Benjamin S Cowan, David L Beveridge, Kelly M Thayer

J Phys Chem B· January 2023

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Network Analysis of Molecular Dynamics Sectors in the p53 Protein.
Jonathan D Fabry, Kelly M Thayer

ACS Omega· January 2023

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Variable Regions of p53 Isoforms Allosterically Hard Code DNA Interaction.
Isabel Armour-Garb, In Sub Mark Han, Benjamin S Cowan, Kelly M Thayer

J Phys Chem B· October 2022

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Mutagenic Activation of Glutathione Peroxidase-4: Approaches toward Rational Design of Allosteric Drugs.
Chunyue Ma, Daniel J Chung, Dylan Abramson, David R Langley, Kelly M Thayer

ACS Omega· August 2022

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Insights into Rational Design of a New Class of Allosteric Effectors with Molecular Dynamics Markov State Models and Network Theory.
In Sub M Han, Dylan Abramson, Kelly M Thayer

ACS Omega· January 2022

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The CAR-mRNA Interaction Surface Is a Zipper Extension of the Ribosome A Site.
Carol Dalgarno, Kristen Scopino, Mitsu Raval, Clara Nachmanoff, Eric D Sakkas, Kelly M Thayer

Int J Mol Sci· January 2022

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Estradiol induces allosteric coupling and partitioning of sex-hormone-binding globulin monomers among conformational states.
Ravi Jasuja, Daniel Spencer, Abhilash Jayaraj, Liming Peng, Meenakshi Krishna, Kelly M Thayer

iScience· June 2021

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Arginine Methylation Regulates Ribosome CAR Function.
Kristen Scopino, Carol Dalgarno, Clara Nachmanoff, Daniel Krizanc, Kelly M Thayer

Int J Mol Sci· January 2021

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GCN sensitive protein translation in yeast.
William A Barr, Ruchi B Sheth, Jack Kwon, Jungwoo Cho, Jacob W Glickman, Kelly M Thayer

PLoS One· October 2020

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A Ribosome Interaction Surface Sensitive to mRNA GCN Periodicity.
Kristen Scopino, Elliot Williams, Abdelrahman Elsayed, William A Barr, Daniel Krizanc, Kelly M Thayer

Biomolecules· June 2020

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Spectral analysis of molecular dynamics simulations on PDZ: MD sectors.
Bharat Lakhani, Kelly M Thayer, Emily Black, David L Beveridge

J Biomol Struct Dyn· February 2020

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Homologs of the Tumor Suppressor Protein p53: A Bioinformatics Study for Drug Design.
Kelly M Thayer, Claudia Carcamo

MOJ Proteom Bioinform· February 2020

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Toward a Universal Structural and Energetic Model for Prokaryotic Promoters.
Akhilesh Mishra, Priyanka Siwach, Pallavi Misra, Bhyravabhotla Jayaram, Manju Bansal, Kelly M Thayer

Biophys J· October 2018

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Dependence of prevalence of contiguous pathways in proteins on structural complexity.
Kelly M Thayer, Jesse C Galganov, Avram J Stein

PLoS One· January 2018

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Chemical principles additive model aligns low consensus DNA targets of p53 tumor suppressor protein.
Kelly M Thayer, In Sub M Han

Comput Biol Chem· June 2017

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Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit.
Kelly M Thayer, Bharat Lakhani, David L Beveridge

J Phys Chem B· June 2017

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