Publications by authors named "Kun D Huang"

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The impact of regular sauerkraut consumption on the human gut microbiota: a crossover intervention trial.
Nelly Schropp, Alexander Bauer, Virginie Stanislas, Kun D Huang, Till-Robin Lesker, Agata Anna Bielecka, Till Strowig, Karin B Michels

Microbiome· February 2025

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Reconstruction of ancient microbial genomes from the human gut.
Marsha C Wibowo, Zhen Yang, Maxime Borry, Alexander Hübner, Kun D Huang, Braden T Tierney, Samuel Zimmerman, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Humberto García-Ortiz

June 2021

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Dietary selective effects manifest in the human gut microbiota from species composition to strain genetic makeup.
Kun D Huang, Mattea Müller, Pavaret Sivapornnukul, Agata Anna Bielecka, Lena Amend

Cell Rep· January 2025

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Dietary selective effects manifest in the human gut microbiota from species composition to strain genetic makeup.
Kun D Huang, Mattea Müller, Pavaret Sivapornnukul, Agata Anna Bielecka, Lena Amend

Cell Rep· December 2024

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The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization.
Youssef El Mouali, Caroline Tawk, Kun D Huang, Lena Amend, Till Robin Lesker

Cell Host Microbe· November 2024

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Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices.
Kun D Huang, Lena Amend, Eric J C Gálvez, Till-Robin Lesker, Romulo de Oliveira

Cell Rep Med· March 2024

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Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.
Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, Lauren J McIver, Kelsey N Thompson, Kun D Huang

Nat Biotechnol· November 2023

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Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions.
Aitor Blanco-Míguez, Eric J C Gálvez, Edoardo Pasolli, Francesca De Filippis, Lena Amend, Kun D Huang

Cell Host Microbe· November 2023

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Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population.
Serena Manara, Marta Selma-Royo, Kun D Huang, Francesco Asnicar, Federica Armanini

Curr Biol· May 2023

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MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice.
Paolo Manghi, Aitor Blanco-Míguez, Serena Manara, Amir NabiNejad, Fabio Cumbo, Kun D Huang

Cell Rep· May 2023

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The person-to-person transmission landscape of the gut and oral microbiomes.
Mireia Valles-Colomer, Aitor Blanco-Míguez, Paolo Manghi, Francesco Asnicar, Leonard Dubois, Kun D Huang

Nature· February 2023

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Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period.
Frank Maixner, Mohamed S Sarhan, Kun D Huang, Adrian Tett, Alexander Schoenafinger

Curr Biol· December 2021

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Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter.
Lena Granehäll, Kun D Huang, Adrian Tett, Paolo Manghi, Alice Paladin

Microbiome· September 2021

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Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations.
Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun D Huang, Adrian Tett

Genome Biol· June 2020

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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.
Adrian Tett, Kun D Huang, Francesco Asnicar, Hannah Fehlner-Peach, Edoardo Pasolli

Cell Host Microbe· November 2019

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Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades.
Anne Kupczok, Horst Neve, Kun D Huang, Marc P Hoeppner, Knut J Heller

Mol Biol Evol· May 2018

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