Publications by authors named "MF Thorpe"

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Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
Sean L Seyler, Avishek Kumar, M F Thorpe, Oliver Beckstein

PLoS Comput Biol· June 2019

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A broader view on jamming: from spring networks to circle packings.
Varda F Hagh, Eric I Corwin, Kenneth Stephenson, M F Thorpe

Soft Matter· April 2019

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Ring correlations in random networks.
Mahdi Sadjadi, M F Thorpe

Phys Rev E· December 2016

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Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.
Avishek Kumar, Paul Campitelli, M F Thorpe, S Banu Ozkan

Proteins· December 2015

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Anchored boundary conditions for locally isostatic networks.
Louis Theran, Anthony Nixon, Elissa Ross, Mahdi Sadjadi, Brigitte Servatius, M F Thorpe

Phys Rev E Stat Nonlin Soft Matter Phys· November 2015

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Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
Sean L Seyler, Avishek Kumar, M F Thorpe, Oliver Beckstein

PLoS Comput Biol· October 2015

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Rigidity loss in disordered systems: three scenarios.
Wouter G Ellenbroek, Varda F Hagh, Avishek Kumar, M F Thorpe, Martin van Hecke

Phys Rev Lett· April 2015

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Ring statistics of silica bilayers.
Avishek Kumar, David Sherrington, Mark Wilson, M F Thorpe

J Phys Condens Matter· October 2014

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Two exactly soluble models of rigidity percolation.
M F Thorpe, R B Stinchcombe

Philos Trans A Math Phys Eng Sci· February 2014

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Fast calculation of the infrared spectra of large biomolecules.
A J Mott, S P Thirumuruganandham, M F Thorpe, P Rez

Eur Biophys J· December 2013

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Bond percolation in higher dimensions.
Eric I Corwin, Robin Stinchcombe, M F Thorpe

Phys Rev E Stat Nonlin Soft Matter Phys· July 2013

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Amorphous graphene: a realization of Zachariasen's glass.
Avishek Kumar, Mark Wilson, M F Thorpe

J Phys Condens Matter· December 2012

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Collective dynamics differentiates functional divergence in protein evolution.
Tyler J Glembo, Daniel W Farrell, Z Nevin Gerek, M F Thorpe, S Banu Ozkan

PLoS Comput Biol· June 2012

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DNA Bending through Large Angles Is Aided by Ionic Screening.
Justin Spiriti, Hiqmet Kamberaj, Adam M R de Graff, M F Thorpe, Arjan van der Vaart

J Chem Theory Comput· June 2012

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Protein unfolding under force: crack propagation in a network.
Adam M R de Graff, Gareth Shannon, Daniel W Farrell, Philip M Williams, M F Thorpe

Biophys J· August 2011

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Comparison of pathways from the geometric targeting method and targeted molecular dynamics in nitrogen regulatory protein C.
Daniel W Farrell, Ming Lei, M F Thorpe

Phys Biol· April 2011

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Generating stereochemically acceptable protein pathways.
Daniel W Farrell, Kirill Speranskiy, M F Thorpe

Proteins· November 2010

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Flexibility of ideal zeolite frameworks.
V Kapko, C Dawson, M M J Treacy, M F Thorpe

Phys Chem Chem Phys· August 2010

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The long-wavelength limit of the structure factor of amorphous silicon and vitreous silica.
Adam M R de Graff, M F Thorpe

Acta Crystallogr A· January 2010

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Hierarchical plasticity from pair distance fluctuations.
S A Menor, Adam M R de Graff, M F Thorpe

Phys Biol· July 2009

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Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.
Craig C Jolley, Stephen A Wells, Petra Fromme, M F Thorpe

Biophys J· March 2008

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Algorithms for three-dimensional rigidity analysis and a first-order percolation transition.
M V Chubynsky, M F Thorpe

Phys Rev E Stat Nonlin Soft Matter Phys· October 2007

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Quadrupolar ordering in LaMnO3 revealed from scattering data and geometric modeling.
A Sartbaeva, S A Wells, M F Thorpe, E S Bozin, S J L Billinge

Phys Rev Lett· October 2007

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Quantum correction to the pair distribution function.
V A Levashov, S J L Billinge, M F Thorpe

J Comput Chem· August 2007

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Comment on elastic network models and proteins.
M F Thorpe

Phys Biol· April 2007

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