Publications by authors named "MJ Lercher"

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DeepMolecules: a web server for predicting enzyme and transporter-small molecule interactions.
Alexander Kroll, Yvan Rousset, Thomas Spitzlei, Martin J Lercher

Nucleic Acids Res· July 2025

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Horizontal Gene Transfer Inference: Gene Presence-Absence Outperforms Gene Trees.
Swastik Mishra, Martin J Lercher

Mol Biol Evol· July 2025

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Openness guides discovery.
Itai Yanai, Martin J Lercher

Nat Biotechnol· May 2025

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Most bacterial gene families are biased toward specific chromosomal positions.
Xiao-Pan Hu, Bayu Brahmantio, Krzysztof Bartoszek, Martin J Lercher

Science· April 2025

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SPOT: A machine learning model that predicts specific substrates for transport proteins.
Alexander Kroll, Nico Niebuhr, Gregory Butler, Martin J Lercher

PLoS Biol· September 2024

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Teach creativity in science higher education.
Itai Yanai, Oliver Bogler, Sean B Carroll, Jennifer Couch, Maria Lund Dahlberg, Martin J Lercher

Science· August 2024

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DLKcat cannot predict meaningful values for mutants and unfamiliar enzymes.
Alexander Kroll, Martin J Lercher

Biol Methods Protoc· August 2024

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A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships.
Alexander Kroll, Sahasra Ranjan, Martin J Lercher

PLoS Comput Biol· May 2024

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It takes two to think.
Itai Yanai, Martin J Lercher

Nat Biotechnol· January 2024

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Proteome efficiency of metabolic pathways in increases along the nutrient flow.
Xiao-Pan Hu, Stefan Schroeder, Martin J Lercher

mSystems· October 2023

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Turnover number predictions for kinetically uncharacterized enzymes using machine and deep learning.
Alexander Kroll, Yvan Rousset, Xiao-Pan Hu, Nina A Liebrand, Martin J Lercher

Nat Commun· July 2023

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Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth.
Hugo Dourado, Wolfram Liebermeister, Oliver Ebenhöh, Martin J Lercher

PLoS Comput Biol· June 2023

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Optimal density of bacterial cells.
Tin Yau Pang, Martin J Lercher

PLoS Comput Biol· June 2023

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Make science disruptive again.
Itai Yanai, Martin J Lercher

Nat Biotechnol· April 2023

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Viridiplantae-specific GLXI and GLXII isoforms co-evolved and detoxify glucosone in planta.
Manuel Balparda, Jessica Schmitz, Martin Duemmel, Isabell C Wuthenow, Marc Schmidt, Martin J Lercher

Plant Physiol· February 2023

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Growth-mediated negative feedback shapes quantitative antibiotic response.
S Andreas Angermayr, Tin Yau Pang, Guillaume Chevereau, Karin Mitosch, Martin J Lercher

Mol Syst Biol· September 2022

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What puzzle are you in?
Itai Yanai, Martin J Lercher

Genome Biol· August 2022

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Iterations of evolution St. Martin's Press, 2021. 288 pp.
Itai Yanai, Martin J Lercher

Science· November 2021

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An optimal growth law for RNA composition and its partial implementation through ribosomal and tRNA gene locations in bacterial genomes.
Xiao-Pan Hu, Martin J Lercher

PLoS Genet· November 2021

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Deep learning allows genome-scale prediction of Michaelis constants from structural features.
Alexander Kroll, Martin K M Engqvist, David Heckmann, Martin J Lercher

PLoS Biol· October 2021

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On the optimality of the enzyme-substrate relationship in bacteria.
Hugo Dourado, Matteo Mori, Terence Hwa, Martin J Lercher

PLoS Biol· October 2021

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Interdependence of a mechanosensitive anion channel and glutamate receptors in distal wound signaling.
Jacob Moe-Lange, Nicoline M Gappel, Mackenzie Machado, Michael M Wudick, Cosima S A Sies, Martin J Lercher

Sci Adv· September 2021

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Modeling photosynthetic resource allocation connects physiology with evolutionary environments.
Esther M Sundermann, Martin J Lercher, David Heckmann

Sci Rep· August 2021

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The protein translation machinery is expressed for maximal efficiency in Escherichia coli.
Xiao-Pan Hu, Hugo Dourado, Peter Schubert, Martin J Lercher

Nat Commun· October 2020

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