Publications by authors named "Markus D Herrmann"

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NCI Imaging Data Commons.
Andrey Fedorov, William J R Longabaugh, David Pot, David A Clunie, Steve Pieper, Hugo J W L Aerts, André Homeyer, Rob Lewis, Afshin Akbarzadeh, Dennis Bontempi

Cancer Res· August 2021

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Reversible downregulation of HLA class I in adenoid cystic carcinoma.
Annie Li, Bianca L Gonda, Elizabeth M Codd, Adam von Paternos, Dawn R Mitchell, Markus D Herrmann

J Immunother Cancer· April 2025

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Recommendations for Performance Evaluation of Machine Learning in Pathology: A Concept Paper From the College of American Pathologists.
Matthew G Hanna, Niels H Olson, Mark Zarella, Rajesh C Dash, Markus D Herrmann

Arch Pathol Lab Med· October 2024

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The NCI Imaging Data Commons as a platform for reproducible research in computational pathology.
Daniela P Schacherer, Markus D Herrmann, David A Clunie, Henning Höfener, William Clifford

Comput Methods Programs Biomed· December 2023

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National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence.
Andrey Fedorov, William J R Longabaugh, David Pot, David A Clunie, Steven D Pieper, Markus D Herrmann

Radiographics· December 2023

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Volumetric Tissue Imaging of Surgical Tissue Specimens Using Micro-Computed Tomography: An Emerging Digital Pathology Modality for Nondestructive, Slide-Free Microscopy-Clinical Applications of Digital Pathology in 3 Dimensions.
Andreas S Papazoglou, Efstratios Karagiannidis, Alexandros Liatsos, Andreana Bompoti, Dimitrios V Moysidis, Markus D Herrmann

Am J Clin Pathol· March 2023

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Interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology.
Chris Gorman, Davide Punzo, Igor Octaviano, Steven Pieper, William J R Longabaugh, Markus D Herrmann

Nat Commun· March 2023

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Computational pathology in 2030: a Delphi study forecasting the role of AI in pathology within the next decade.
M Alvaro Berbís, David S McClintock, Andrey Bychkov, Jeroen Van der Laak, Liron Pantanowitz, Markus D Herrmann

EBioMedicine· February 2023

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Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology.
Christopher P Bridge, Chris Gorman, Steven Pieper, Sean W Doyle, Jochen K Lennerz, Markus D Herrmann

J Digit Imaging· December 2022

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MITI minimum information guidelines for highly multiplexed tissue images.
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen, Markus D Herrmann

Nat Methods· March 2022

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Current clinical applications and potential perspective of micro-computed tomography in cardiovascular imaging: A systematic scoping review.
Andreas S Papazoglou, Efstratios Karagiannidis, Dimitrios V Moysidis, Georgios Sofidis, Andreana Bompoti, Markus D Herrmann

Hellenic J Cardiol· December 2021

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Volumetric Imaging of Lung Tissue at Micrometer Resolution: Clinical Applications of Micro-CT for the Diagnosis of Pulmonary Diseases.
Andreana Bompoti, Andreas S Papazoglou, Dimitrios V Moysidis, Nikolaos Otountzidis, Efstratios Karagiannidis, Markus D Herrmann

Diagnostics (Basel)· November 2021

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A Pathologist-Annotated Dataset for Validating Artificial Intelligence: A Project Description and Pilot Study.
Sarah N Dudgeon, Si Wen, Matthew G Hanna, Rajarsi Gupta, Mohamed Amgad, Markus D Herrmann

J Pathol Inform· November 2021

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Integrating the Health-care Enterprise Pathology and Laboratory Medicine Guideline for Digital Pathology Interoperability.
Rajesh C Dash, Nicholas Jones, Riki Merrick, Gunter Haroske, James Harrison, Markus D Herrmann

J Pathol Inform· March 2021

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[Technical, operational, and regulatory considerations for the adoption of digital and computational pathology].
Markus D Herrmann, Jochen K Lennerz

Pathologe· December 2020

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A Regulatory Science Initiative to Harmonize and Standardize Digital Pathology and Machine Learning Processes to Speed up Clinical Innovation to Patients.
Hetal Desai Marble, Richard Huang, Sarah Nixon Dudgeon, Amanda Lowe, Markus D Herrmann

J Pathol Inform· August 2020

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Quantitative Imaging Informatics for Cancer Research.
Andrey Fedorov, Reinhard Beichel, Jayashree Kalpathy-Cramer, David Clunie, Michael Onken, Markus D Herrmann

JCO Clin Cancer Inform· May 2020

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Implementing the DICOM Standard for Digital Pathology.
Markus D Herrmann, David A Clunie, Andriy Fedorov, Sean W Doyle, Steven Pieper

J Pathol Inform· November 2018

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Multiplexed protein maps link subcellular organization to cellular states.
Gabriele Gut, Markus D Herrmann, Lucas Pelkmans

Science· August 2018

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Data-analysis strategies for image-based cell profiling.
Juan C Caicedo, Sam Cooper, Florian Heigwer, Scott Warchal, Peng Qiu, Markus D Herrmann

Nat Methods· August 2017

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Computer vision for image-based transcriptomics.
Thomas Stoeger, Nico Battich, Markus D Herrmann, Yauhen Yakimovich, Lucas Pelkmans

Methods· September 2015

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Isolated Whipple's endocarditis: an underestimated diagnosis that requires molecular analysis of surgical material.
Markus D Herrmann, Annette Neumayr, Andreas Essig, Jochen Spiess, Johannes Merk

Ann Thorac Surg· July 2014

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Transitory dasatinib-resistant states in KIT(mut) t(8;21) acute myeloid leukemia cells correlate with altered KIT expression.
Markus D Herrmann, Jochen K Lennerz, Lars Bullinger, Stephan Bartholomae, Karlheinz Holzmann

Exp Hematol· February 2014

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