Publications by authors named "Matthew Bendall"

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Endogenous retroelement expression in modeled airway epithelial repair.
Stephanie Michael, Nicholas Liotta, Tongyi Fei, Matthew L Bendall, Douglas F Nixon

Microbes Infect· August 2025

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A single-cell transposable element atlas of human cell identity.
Helena Reyes-Gopar, Jez L Marston, Bhavya Singh, Matthew Greenig, Jonah Lin, Matthew L Bendall

Cell Rep Methods· July 2025

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Integration of chromosome conformation and gene expression networks reveals regulatory mechanisms in triple negative breast cancer.
Helena Reyes-Gopar, Keila Adonai Pérez-Fuentes, Matthew L Bendall, Enrique Hernández-Lemus

Front Cell Dev Biol· July 2025

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Locus-specific human endogenous retroviruses reveal lymphoma subtypes.
Bhavya Singh, Nicholas Dopkins, Tongyi Fei, Jez L Marston, Stephanie Michael, Matthew L Bendall

iScience· June 2025

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Transposable elements may enhance antiviral resistance in HIV-1 elite controllers.
Manvendra Singh, Sabrina M Leddy, Luis Pedro Iñiguez, Matthew L Bendall, Douglas F Nixon

Genome Biol· February 2025

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Retro-age: A unique epigenetic biomarker of aging captured by DNA methylation states of retroelements.
Lishomwa C Ndhlovu, Matthew L Bendall, Varun Dwaraka, Alina P S Pang, Nicholas Dopkins

Aging Cell· October 2024

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Endogenous retroelement expression in the gut microenvironment of people living with HIV-1.
Nicholas Dopkins, Tongyi Fei, Stephanie Michael, Nicholas Liotta, Kejun Guo, Matthew L Bendall

EBioMedicine· May 2024

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Integrating human endogenous retroviruses into transcriptome-wide association studies highlights novel risk factors for major psychiatric conditions.
Rodrigo R R Duarte, Oliver Pain, Matthew L Bendall, Miguel de Mulder Rougvie, Jez L Marston

Nat Commun· May 2024

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Ribosomal profiling of human endogenous retroviruses in healthy tissues.
Nicholas Dopkins, Bhavya Singh, Stephanie Michael, Panpan Zhang, Jez L Marston, Matthew L Bendall

BMC Genomics· January 2024

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Retroelement-Age Clocks: Epigenetic Age Captured by Human Endogenous Retrovirus and LINE-1 DNA methylation states.
Lishomwa C Ndhlovu, Matthew L Bendall, Varun Dwaraka, Alina Ps Pang, Nicholas Dopkins

bioRxiv· December 2023

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Transposable elements may enhance antiviral resistance in HIV-1 elite controllers.
Manvendra Singh, Sabrina M Leddy, Luis Pedro Iñiguez, Matthew L Bendall, Douglas F Nixon

bioRxiv· December 2023

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A single-cell transposable element atlas of human cell identity.
Helena Reyes-Gopar, Jez L Marston, Bhavya Singh, Matthew Greenig, Jonah Lin, Matthew L Bendall

bioRxiv· December 2023

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Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci.
Tomas Kanholm, Uzma Rentia, Melissa Hadley, Jennifer A Karlow, Olivia L Cox, Matthew L Bendall

Cancer Res· August 2023

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Locus specific human endogenous retroviruses reveal new lymphoma subtypes.
Bhavya Singh, Nicholas Dopkins, Tongyi Fei, Jez L Marston, Stephanie Michael, Matthew L Bendall

bioRxiv· June 2023

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Endogenous Reverse Transcriptase Inhibition Attenuates TLR5-Mediated Inflammation.
Nicholas Dopkins, Bhavya Singh, Stephanie Michael, Morgan M O'Mara, Jez L Marston, Matthew L Bendall

mBio· February 2023

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Naso-oropharyngeal microbiome from breast cancer patients diagnosed with COVID-19.
Maria Carolina Viana, Gislaine Curty, Carolina Furtado, Bhavya Singh, Matthew L Bendall

Front Microbiol· January 2023

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A field guide to endogenous retrovirus regulatory networks.
Nicholas Dopkins, Morgan M O'Mara, Elsa Lawrence, Tongyi Fei, Santiago Sandoval-Motta, Matthew L Bendall

Mol Cell· October 2022

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How human endogenous retroviruses interact with the microbiota in health and disease.
Nicholas Dopkins, Morgan M O'Mara, Bhavya Singh, Jez L Marston, Matthew L Bendall

Trends Microbiol· September 2022

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Specific human endogenous retroviruses predict metastatic potential in uveal melanoma.
Matthew L Bendall, Jasmine H Francis, Alexander N Shoushtari, Douglas F Nixon

JCI Insight· May 2022

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SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements.
Jez L Marston, Matthew Greenig, Manvendra Singh, Matthew L Bendall, Rodrigo R R Duarte

JCI Insight· December 2021

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Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression.
Nathaniel Stearrett, Tyson Dawson, Ali Rahnavard, Prathyusha Bachali, Matthew L Bendall

Front Immunol· October 2021

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Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers.
Margaret C Steiner, Jez L Marston, Luis P Iñiguez, Matthew L Bendall, Katherine B Chiappinelli

Cancer Res· July 2021

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HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations.
Matthew L Bendall, Keylie M Gibson, Margaret C Steiner, Uzma Rentia, Marcos Pérez-Losada

Mol Biol Evol· April 2021

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Human Endogenous Retrovirus Expression Is Upregulated in the Breast Cancer Microenvironment of HIV Infected Women: A Pilot Study.
Gislaine Curty, Greta A Beckerle, Luis P Iñiguez, Robert L Furler, Pedro S de Carvalho, Matthew L Bendall

Front Oncol· October 2020

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Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival.
Allison R Kolbe, Matthew L Bendall, Alexander T Pearson, Doru Paul, Douglas F Nixon

Viruses· August 2020

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