Publications by authors named "Michael Alonge"

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The complete sequence of a human genome.
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman

April 2022

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Solanum pan-genetics reveals paralogues as contingencies in crop engineering.
Matthias Benoit, Katharine M Jenike, James W Satterlee, Srividya Ramakrishnan, Iacopo Gentile, Michael Alonge

Nature· April 2025

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Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome.
Jia He, Michael Alonge, Srividya Ramakrishnan, Matthias Benoit, Sebastian Soyk

Plant Cell· January 2023

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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.
Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, Katie Jenike, Shujun Ou

Genome Biol· December 2022

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Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Ann M Mc Cartney, Kishwar Shafin, Michael Alonge, Andrey V Bzikadze, Giulio Formenti

Nat Methods· June 2022

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The genetic and epigenetic landscape of the centromeres.
Matthew Naish, Michael Alonge, Piotr Wlodzimierz, Andrew J Tock, Bradley W Abramson

Science· November 2021

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Natural Genetic Diversity in Tomato Flavor Genes.
Lara Pereira, Manoj Sapkota, Michael Alonge, Yi Zheng, Youjun Zhang

Front Plant Sci· June 2021

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Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies.
Michael Alonge, Alaina Shumate, Daniela Puiu, Aleksey V Zimin, Steven L Salzberg

Genetics· October 2020

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Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.
Michael Alonge, Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira

Cell· July 2020

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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Aaron M Wenger, Paul Peluso, William J Rowell, Pi-Chuan Chang, Richard J Hall, Michael Alonge

Nat Biotechnol· October 2019

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The bracteatus pineapple genome and domestication of clonally propagated crops.
Li-Yu Chen, Robert VanBuren, Margot Paris, Hongye Zhou, Xingtan Zhang, Michael Alonge

Nat Genet· October 2019

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RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, Xingang Wang, Sara Goodwin

Genome Biol· October 2019

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Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato.
Sebastian Soyk, Zachary H Lemmon, Fritz J Sedlazeck, José M Jiménez-Gómez, Michael Alonge

Nat Plants· August 2019

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Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato.
Sebastian Soyk, Zachary H Lemmon, Fritz J Sedlazeck, José M Jiménez-Gómez, Michael Alonge

Nat Plants· May 2019

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A master regulator of regeneration.
Michael Alonge, Michael C Schatz

Science· March 2019

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The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry).
Matteo Buti, Marco Moretto, Elena Barghini, Flavia Mascagni, Lucia Natali, Michael Alonge

Gigascience· April 2018

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