Publications by authors named "Michael D J Lynch"

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Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice.
Giada De Palma, Michael D J Lynch, Jun Lu, Vi T Dang, Yikang Deng, Jennifer Jury, Genevieve Umeh, Pedro M Miranda, Marc Pigrau Pastor, Sacha Sidani

March 2017

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Genome sequence of N-fixer strain MBI-RS3.
Patricia Dörr de Quadros, Julie E Hernandez-Salmeron, Michael D J Lynch, Jiujung Cheng, Trevor C Charles

Microbiol Resour Announc· October 2025

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Rapid shift of gut microbiome and enrichment of beneficial microbes during arhatic yoga meditation retreat in a single-arm pilot study.
Sanjay Swarup, Abhishek Gupta, Marianne Chung, Vaishnavi Radhakrishnan, Valerie Davis, Michael D J Lynch

BMC Complement Med Ther· February 2025

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A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada.
Delaney Nash, Isaac Ellmen, Jennifer J Knapp, Ria Menon, Alyssa K Overton, Michael D J Lynch

Viruses· March 2024

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administration alters the gut-brain-behavior axis in a sex-dependent manner in socially monogamous prairie voles.
Meghan Donovan, Calvin S Mackey, Michael D J Lynch, Grayson N Platt, Amber N Brown

Front Microbiol· February 2023

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Effects of laboratory domestication on the rodent gut microbiome.
Kate L Bowerman, Sarah C L Knowles, Janette E Bradley, Laima Baltrūnaitė, Michael D J Lynch

ISME Commun· September 2021

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Transmitting silks of maize have a complex and dynamic microbiome.
Eman M Khalaf, Anuja Shrestha, Jeffrey Rinne, Michael D J Lynch, Charles R Shearer

Sci Rep· June 2021

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Driving factors influencing the rhizobacteriome community structure of plants adapted to multiple climatic stressors in edaphic savannas.
Gem Thomas-Barry, Chaney C G St Martin, Michael D J Lynch, Adesh Ramsubhag, Judy Rouse-Miller

Sci Total Environ· May 2021

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High Throughput Sequencing of MicroRNA in Rainbow Trout Plasma, Mucus, and Surrounding Water Following Acute Stress.
Heather Ikert, Michael D J Lynch, Andrew C Doxey, John P Giesy, Mark R Servos

Front Physiol· January 2021

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Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens.
Briallen Lobb, Rhiannon Hodgson, Michael D J Lynch, Michael J Mansfield, Jiujun Cheng

mSystems· April 2020

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Metagenome-Assembled Genome Sequences of Five Strains from the (Prairie Vole) Fecal Microbiome.
Meghan Donovan, Michael D J Lynch, Calvin S Mackey, Grayson N Platt, Brian K Washburn

Microbiol Resour Announc· January 2020

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Diversity of deep-water coral-associated bacteria and comparison across depth gradients.
Sigmund Jensen, Martin Hovland, Michael D J Lynch, David G Bourne

FEMS Microbiol Ecol· July 2019

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The Completed PacBio Single-Molecule Real-Time Sequence of Strain OB3b Reveals the Presence of a Third Large Plasmid.
John R Heil, Michael D J Lynch, Jiujun Cheng, Ola Matysiakiewicz, Maya D'Alessio

Genome Announc· December 2017

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SSUnique: Detecting Sequence Novelty in Microbiome Surveys.
Michael D J Lynch, Josh D Neufeld

mSystems· December 2016

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Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.
Sigmund Jensen, Michael D J Lynch, Jessica L Ray, Josh D Neufeld, Martin Hovland

Environ Microbiol· October 2015

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Ecology and exploration of the rare biosphere.
Michael D J Lynch, Josh D Neufeld

Nat Rev Microbiol· April 2015

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Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production.
Andrew C Doxey, Daniel A Kurtz, Michael D J Lynch, Laura A Sauder, Josh D Neufeld

ISME J· February 2015

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Evaluating bias of illumina-based bacterial 16S rRNA gene profiles.
Katherine Kennedy, Michael W Hall, Michael D J Lynch, Gabriel Moreno-Hagelsieb, Josh D Neufeld

Appl Environ Microbiol· September 2014

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Bacterial community composition of chronic periodontitis and novel oral sampling sites for detecting disease indicators.
Vaia Galimanas, Michael William Hall, Natasha Singh, Michael David Joseph Lynch, Michael Goldberg

Microbiome· September 2014

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Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm.
Andrea K Bartram, Xingpeng Jiang, Michael D J Lynch, Andre P Masella, Graeme W Nicol

FEMS Microbiol Ecol· February 2014

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Bacterial biogeography of the human digestive tract.
Jennifer C Stearns, Michael D J Lynch, Dilani B Senadheera, Howard C Tenenbaum, Michael B Goldberg

Sci Rep· September 2013

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Targeted recovery of novel phylogenetic diversity from next-generation sequence data.
Michael D J Lynch, Andrea K Bartram, Josh D Neufeld

ISME J· November 2012

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A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)(1).
Judith E Sutherland, Sandra C Lindstrom, Wendy A Nelson, Juliet Brodie, Michael D J Lynch

J Phycol· October 2011

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Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater.
Tara A Moore, Yangping Xing, Brent Lazenby, Michael D J Lynch, Sherry Schiff

Environ Sci Technol· September 2011

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Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads.
Andrea K Bartram, Michael D J Lynch, Jennifer C Stearns, Gabriel Moreno-Hagelsieb, Josh D Neufeld

Appl Environ Microbiol· June 2011

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