Publications by authors named "Michael MacCoss"

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The kinesin motor Kif9 regulates centriolar satellite positioning during interphase.
Juan Jesus Vicente, Michael Wagenbach, Justin Decarreau, Alex Zelter, Michael J MacCoss

Curr Biol· November 2025

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Evaluation of a Prototype Orbitrap Astral Zoom Mass Spectrometer for Quantitative Proteomics─Beyond Identification Lists.
Chris Hsu, Nicholas Shulman, Hamish I Stewart, Johannes Petzoldt, Anna Pashkova, Michael J MacCoss

J Proteome Res· November 2025

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Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics.
Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Michael J MacCoss

Nat Commun· November 2025

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The ProteomeXchange consortium in 2026: making proteomics data FAIR.
Eric W Deutsch, Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy J Carver, Michael J MacCoss

Nucleic Acids Res· November 2025

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Genetic variation in the Nr1d1 transcription factor binding site shapes metabolism-related protein networks associated with cognitive resilience in an Alzheimer's disease mouse reference panel.
Yu Chen, Tamara K Stevenson, Yiding Cao, Lauren A Fish, Julia E Robbins, Michael J MacCoss

Alzheimers Dement· November 2025

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The companion dog as a translational model for Alzheimer's disease: Development of a longitudinal research platform and post mortem protocols.
Stephanie McGrath, Emily Hull, Matthew D Dunbar, Jena Prescott, Amber J Keyser, Michael J MacCoss

Alzheimers Dement· September 2025

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Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data.
Dušica Vidović, Behrouz Shamsaei, Stephan C Schürer, Phillip Kogan, Szymon Chojnacki, Michael J MacCoss

Mol Cell Proteomics· July 2025

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Molecular basis of SIFI activity in the integrated stress response.
Zhi Yang, Diane L Haakonsen, Michael Heider, Samuel R Witus, Alex Zelter, Michael J MacCoss

Nature· July 2025

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Evaluation of a prototype Orbitrap Astral Zoom mass spectrometer for quantitative proteomics - Beyond identification lists.
Chris Hsu, Nicholas Shulman, Hamish Stewart, Johannes Petzoldt, Anna Pashkova, Michael J MacCoss

bioRxiv· July 2025

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Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment.
Bo Wen, Jack Freestone, Michael Riffle, Michael J MacCoss, William S Noble

Nat Methods· July 2025

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Enrichment of extracellular vesicles using Mag-Net for the analysis of the plasma proteome.
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Michael J MacCoss

Nat Commun· July 2025

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A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data.
Justin Sanders, Bo Wen, Paul A Rudnick, Richard S Johnson, Christine C Wu, Michael J MacCoss

Nat Methods· July 2025

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Performance of novel tau antibodies across multiple modalities for Alzheimer's disease assessment.
Poonam Trivedi, Katrina Forrest, Daniel W Fisher, Joanna K Winstone, Pamela J McMillan, Michael J MacCoss

Alzheimers Dement· July 2025

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Tissue-specific metabolomic signatures for a model of reduced sexual dimorphism.
Rene Coig, Benjamin Harrison, Richard Johnson, Michael J MacCoss, Daniel Promislow

R Soc Open Sci· July 2025

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Corrigendum to "Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data".
Dušica Vidović, Behrouz Shamsaei, Stephan C Schürer, Phillip Kogan, Szymon Chojnacki, Michael J MacCoss

Mol Cell Proteomics· July 2025

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The Need for Better Validation: Evaluating Aptamer and Proximity Extension Assays for Large-Scale Clinical Proteomics Studies.
Andrew N Hoofnagle, Michael J MacCoss

Clin Chem· June 2025

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Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer.
Deanna L Plubell, Eric Huang, Sandra E Spencer, Kathleen L Poston, Thomas J Montine, Michael J MacCoss

J Proteome Res· June 2025

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Biomarkers, Proteoforms, and Mass Spectrometry-Based Assays for Diabetes Clinical Research.
Lorenz A Nierves, Tai-Tu Lin, Annie Moradian, Qingqing Shen, Salvatore Sechi, Michael J MacCoss

J Clin Endocrinol Metab· May 2025

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Open-Source and FAIR Research Software for Proteomics.
Yasset Perez-Riverol, Wout Bittremieux, William S Noble, Lennart Martens, Aivett Bilbao, Michael J MacCoss

J Proteome Res· May 2025

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Improved quantitative accuracy in data-independent acquisition proteomics via retention time boundary imputation.
Lincoln Harris, Michael Riffle, William Stafford Noble, Michael J MacCoss

bioRxiv· May 2025

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Limelight: An Open, Web-Based Tool for Visualizing, Sharing, and Analyzing Mass Spectrometry Data from DDA Pipelines.
Michael Riffle, Alex Zelter, Daniel Jaschob, Michael R Hoopmann, Danielle A Faivre, Michael J MacCoss

J Proteome Res· April 2025

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Quantification of glucagon and oxyntomodulin by protein precipitation-immunoaffinity enrichment-LC-MS/MS.
Jessica O Becker, Sara K Shijo, Huu-Hien Huynh, Katrina L Forrest, Michael J MacCoss

J Mass Spectrom Adv Clin Lab· April 2025

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Massively parallel assessment of designed protein solution properties using mass spectrometry and peptide barcoding.
David Feldman, Jeremiah N Sims, Xinting Li, Richard Johnson, Stacey Gerben, Michael J MacCoss

bioRxiv· February 2025

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Data from a multi-year targeted proteomics study of a longitudinal birth cohort of type 1 diabetes.
Lisa M Bramer, Ernesto S Nakayasu, Javier E Flores, Jennifer E Van Eyk, Michael J MacCoss

Sci Data· January 2025

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Hybrid Quadrupole Mass Filter-Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics.
Philip M Remes, Cristina C Jacob, Lilian R Heil, Nicholas Shulman, Brendan X MacLean, Michael J MacCoss

J Proteome Res· December 2024

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