Publications by authors named "Mikhail Gelfand"

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Do we actually need aging clocks?
Dmitrii Kriukov, Evgeniy Efimov, Mikhail S Gelfand, Alexey Moskalev, Ekaterina E Khrameeva

NPJ Aging· December 2025

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Translon: a single term for translated regions.
Michał I Świrski, Jack A S Tierney, M Mar Albà, Dmitry E Andreev, Julie L Aspden, Mikhail S Gelfand

Nat Methods· October 2025

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Sulfoquinovose Catabolism in Strains: Compositional and Functional Divergence of Gene Cassettes.
Anna D Kaznadzey, Anna A Rybina, Tatiana A Bessonova, Dmitriy S Korshunov, Maria N Tutukina, Mikhail S Gelfand

Int J Mol Sci· October 2025

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Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation.
Aleksandra Galitsyna, Sergey V Ulianov, Mariia Bazarevich, Nikolai S Bykov, Marina Veil, Mikhail S Gelfand

bioRxiv· July 2025

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Microbial diversity of high-elevated fumarole fields, low-biomass communities on the boundary between ice and fire.
Alla Yu Shevchenko, Gleb I Ursalov, Natalya I Eromasova, Pavel V Shelyakin, Mikhail S Gelfand

Sci Rep· May 2025

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On "Bioinformatics in Russia: history and present-day landscape" by M.A. Nawaz, I.E. Pamirsky, and K.S. Golokhvast.
Mikhail S Gelfand

Brief Bioinform· May 2025

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Temporal Dynamics of Gene Expression During Metamorphosis in Two Distant Drosophila Species.
Aleksandra M Ozerova, Dina A Kulikova, Mikhail B Evgen'ev, Mikhail S Gelfand

Genome Biol Evol· May 2025

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Convergent pairs of highly transcribed genes restrict chromatin looping in Dictyostelium discoideum.
Irina V Zhegalova, Sergey V Ulianov, Aleksandra A Galitsyna, Ilya A Pletenev, Olga V Tsoy, Mikhail S Gelfand

Nucleic Acids Res· January 2025

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Monitoring of meat quality and change-point detection by a sensor array and profiling of bacterial communities.
Valeriy Zaytsev, Maria N Tutukina, Margarita R Chetyrkina, Pavel V Shelyakin, George Ovchinnikov, Mikhail S Gelfand

Anal Chim Acta· September 2024

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Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors.
Sofya K Garushyants, Mrudula Sane, Maria V Selifanova, Deepa Agashe, Georgii A Bazykin, Mikhail S Gelfand

Genome Biol Evol· April 2024

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Phylogeny and structural modeling of the transcription factor CsqR (YihW) from Escherichia coli.
Anna A Rybina, Roman A Glushak, Tatiana A Bessonova, Artemiy I Dakhnovets, Alexander Yu Rudenko, Mikhail S Gelfand

Sci Rep· April 2024

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Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods.
Ivan Bulygin, Vladislav Shatov, Anton Rykachevskiy, Arsenii Raiko, Alexander Bernstein, Mikhail S Gelfand

PeerJ· September 2023

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Nontriplet feature of genetic code in ciliates is a result of neutral evolution.
Sofya A Gaydukova, Mikhail A Moldovan, Adriana Vallesi, Stephen M Heaphy, John F Atkins, Mikhail S Gelfand

Proc Natl Acad Sci U S A· May 2023

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HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases.
Victoria A Kobets, Sergey V Ulianov, Aleksandra A Galitsyna, Semen A Doronin, Elena A Mikhaleva, Mikhail S Gelfand

Brief Bioinform· March 2023

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Data on the temporal changes in soil properties and microbiome composition after a jet-fuel contamination during the pot and field experiments.
Ivan N Semenkov, Pavel V Shelyakin, Daria D Nikolaeva, Maria N Tutukina, Anna V Sharapova, Mikhail S Gelfand

Data Brief· February 2023

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Sense and antisense RNA products of the gene can affect motility and chemotaxis acting independent of the UxuR protein.
Maria N Tutukina, Artemiy I Dakhnovets, Anna D Kaznadzey, Mikhail S Gelfand, Olga N Ozoline

Front Mol Biosci· February 2023

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Predicting RNA secondary structure by a neural network: what features may be learned?
Elizaveta I Grigorashvili, Zoe S Chervontseva, Mikhail S Gelfand

PeerJ· January 2023

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Recapitulation of the embryonic transcriptional program in holometabolous insect pupae.
Alexandra M Ozerova, Mikhail S Gelfand

Sci Rep· October 2022

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Dosage Compensation in : Its Canonical and Non-Canonical Mechanisms.
Yuri Y Shevelyov, Sergey V Ulianov, Mikhail S Gelfand, Stepan N Belyakin, Sergey V Razin

Int J Mol Sci· September 2022

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Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria.
German A Ashniev, Natalia V Sernova, Aleksei E Shevkoplias, Ivan D Rodionov, Irina A Rodionova, Mikhail S Gelfand

BMC Genomics· August 2022

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APOBEC mutagenesis is low in most types of non-B DNA structures.
Gennady V Ponomarev, Bulat Fatykhov, Vladimir A Nazarov, Ruslan Abasov, Evgeny Shvarov, Mikhail S Gelfand

iScience· July 2022

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Differential Impact of Hexuronate Regulators ExuR and UxuR on the Proteome.
Tatiana A Bessonova, Maria S Fando, Olga S Kostareva, Maria N Tutukina, Olga N Ozoline, Mikhail S Gelfand

Int J Mol Sci· July 2022

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Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia.
Natalia O Dranenko, Maria N Tutukina, Mikhail S Gelfand, Fyodor A Kondrashov, Olga O Bochkareva

Sci Rep· April 2022

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A hierarchy in clusters of cephalopod mRNA editing sites.
Mikhail A Moldovan, Zoe S Chervontseva, Daria S Nogina, Mikhail S Gelfand

Sci Rep· March 2022

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The Influence of Kerosene on Microbiomes of Diverse Soils.
Pavel V Shelyakin, Ivan N Semenkov, Maria N Tutukina, Daria D Nikolaeva, Anna V Sharapova, Mikhail S Gelfand

Life (Basel)· January 2022

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