Publications by authors named "Neil Smalheiser"

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Finding Case Report Nuggets: A Web-Based Tool for Mining and Enhancing the Value of Clinical Case Reports.
Arthur W Holt, Neil R Smalheiser

medRxiv· November 2025

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Linking Trials to Publications: Enhancing Recall by Identifying Trial Registry Mentions in Full-Text.
Arthur W Holt, Neil R Smalheiser

medRxiv· June 2025

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Publication Type Tagging using Transformer Models and Multi-Label Classification.
Joe D Menke, Halil Kilicoglu, Neil R Smalheiser

AMIA Annu Symp Proc· May 2025

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Enhancing automated indexing of publication types and study designs in biomedical literature using full-text features.
Joe D Menke, Shufan Ming, Shruthan Radhakrishna, Halil Kilicoglu, Neil R Smalheiser

medRxiv· April 2025

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Publication Type Tagging using Transformer Models and Multi-Label Classification.
Joe D Menke, Halil Kilicoglu, Neil R Smalheiser

medRxiv· March 2025

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Issues regarding the Indexing of Adaptive Clinical Trial Articles.
Neil R Smalheiser, Andrew Shahidehpour, Ang Michael Troy

medRxiv· March 2025

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Distribution of trial registry numbers within full-text of PubMed Central articles: implications for linking trials to publications and indexing trial publication types.
Arthur M Holt, Ang Michael Troy, Neil R Smalheiser

Trials· January 2025

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Mobile circular DNAs regulating memory and communication in CNS neurons.
Neil R Smalheiser

Front Mol Neurosci· December 2023

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Testing a filtering strategy for systematic reviews: evaluating work savings and recall.
Randi Proescholdt, Tzu-Kun Hsiao, Jodi Schneider, Aaron M Cohen, Marian S McDonagh, Neil R Smalheiser

AMIA Jt Summits Transl Sci Proc· June 2023

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Editorial: Emerging areas in literature-based discovery.
Yakub Sebastian, Neil R Smalheiser

Front Res Metr Anal· January 2023

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A web-based tool for automatically linking clinical trials to their publications.
Neil R Smalheiser, Arthur W Holt

J Am Med Inform Assoc· April 2022

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Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews.
Jodi Schneider, Linh Hoang, Yogeshwar Kansara, Aaron M Cohen, Neil R Smalheiser

JAMIA Open· April 2022

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The Citation Cloud of a biomedical article: a free, public, web-based tool enabling citation analysis.
Neil R Smalheiser, Jodi Schneider, Vetle I Torvik, Dean P Fragnito, Eric E Tirk

J Med Libr Assoc· January 2022

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Anne O'Tate: Value-added PubMed search engine for analysis and text mining.
Neil R Smalheiser, Dean P Fragnito, Eric E Tirk

PLoS One· October 2021

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Effect size, sample size and power of forced swim test assays in mice: Guidelines for investigators to optimize reproducibility.
Neil R Smalheiser, Elena E Graetz, Zhou Yu, Jing Wang

PLoS One· July 2021

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Editorial: Coronavirus Research Landscape: Resources, Utilities, and Analytic Studies.
Chaomei Chen, David Chavalarias, Neil R Smalheiser, Dietmar Wolfram

Front Res Metr Anal· June 2021

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New improved Aggregator: predicting which clinical trial articles derive from the same registered clinical trial.
Neil R Smalheiser, Arthur W Holt

JAMIA Open· October 2020

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Identifying main finding sentences in clinical case reports.
Mengqi Luo, Aaron M Cohen, Sidharth Addepalli, Neil R Smalheiser

Database (Oxford)· January 2020

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A Neglected Link Between the Psychoactive Effects of Dietary Ingredients and Consciousness-Altering Drugs.
Neil R Smalheiser

Front Psychiatry· August 2019

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Ketamine: A Neglected Therapy for Alzheimer Disease.
Neil R Smalheiser

Front Aging Neurosci· July 2019

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Mining Clinical Case Reports to Identify New Lines of Investigation in Alzheimer's Disease: The Curious Case of DNase I.
Neil R Smalheiser

J Alzheimers Dis Rep· March 2019

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Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings.
Neil R Smalheiser, Aaron M Cohen, Gary Bonifield

J Biomed Inform· February 2019

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A manual corpus of annotated main findings of clinical case reports.
Neil R Smalheiser, Mengqi Luo, Sidharth Addepalli, Xiaokai Cui

Database (Oxford)· January 2019

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Design of a generic, open platform for machine learning-assisted indexing and clustering of articles in PubMed, a biomedical bibliographic database.
Neil R Smalheiser, Aaron M Cohen

Data Inf Manag· June 2018

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A probabilistic automated tagger to identify human-related publications.
Aaron M Cohen, Zackary O Dunivin, Neil R Smalheiser

Database (Oxford)· January 2018

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