Publications by authors named "Pablo de Sa"

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ReNoteWeb - Web platform for the improvement of assembly result and annotation of prokaryotic genomes.
Gislenne da Silva Moia, Antônio Sérgio Cruz Gaia, Mônica Silva de Oliveira, Victória Cardoso Dos Santosa, Jorianne Thyeska Castro Alves

Gene· November 2022

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Protocol to analyze the bacterial pangenome using PAN2HGENE software.
Pablo Henrique Caracciolo Gomes de Sá, Jorianne Thyeska Castro Alves, Adonney Allan de Oliveira Veras

STAR Protoc· June 2022

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CODON-Software to manual curation of prokaryotic genomes.
Bruno Merlin, Jorianne Thyeska Castro Alves, Pablo Henrique Caracciolo Gomes de Sá, Mônica Silva de Oliveira, Larissa Maranhão Dias, Victória Cardoso Dos Santos

PLoS Comput Biol· March 2021

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NGSReadsTreatment - A Cuckoo Filter-based Tool for Removing Duplicate Reads in NGS Data.
Antonio Sérgio Cruz Gaia, Pablo Henrique Caracciolo Gomes de Sá, Mônica Silva de Oliveira, Adonney Allan de Oliveira Veras

Sci Rep· August 2019

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ImproveAssembly - Tool for identifying new gene products and improving genome assembly.
Adonney Allan de Oliveira Veras, Bruno Merlin, Pablo Henrique Caracciolo Gomes de Sá

PLoS One· April 2019

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Transcriptome analysis of Corynebacterium pseudotuberculosis biovar Equi in two conditions of the environmental stress.
Anne Cybelle Pinto Gomide, Izabela Coimbra Ibraim, Jorianne T C Alves, Pablo Gomes de Sá, Yuri Rafael de Oliveira Silva, Mariana Passos Santana, Silvanira Barbosa

Gene· November 2018

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Heat shock stress: Profile of differential expression in Corynebacterium pseudotuberculosis biovar Equi.
Anne Cybelle Pinto Gomide, Pablo Gomes de Sá, Ana Lidia Queiroz Cavalcante, Thiago de Jesus Sousa, Lucas Gabriel Rodrigues Gomes

Gene· March 2018

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GapBlaster-A Graphical Gap Filler for Prokaryote Genomes.
Pablo H C G de Sá, Fábio Miranda, Adonney Veras, Diego Magalhães de Melo, Siomar Soares

PLoS One· July 2017

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Genomic analysis of four strains of bv. Equi isolated from horses showing distinct signs of infection.
Rafael A Baraúna, Rommel T J Ramos, Adonney A O Veras, Pablo H C G de Sá, Luís C Guimarães

Stand Genomic Sci· January 2017

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GIPSy: Genomic island prediction software.
Siomar C Soares, Hakan Geyik, Rommel T J Ramos, Pablo H C G de Sá, Eudes G V Barbosa

J Biotechnol· August 2016

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Genome Sequence of Corynebacterium pseudotuberculosis Strain PA02 Isolated from an Ovine Host in the Amazon.
Gabriel R S Muge, Adonney A O Veras, Pablo H C G de Sá, Ana Lídia Queiroz Cavalcante, Jorianne Thyeska Castro Alves

Genome Announc· August 2016

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De novo assembly and characterization of the Trichuris trichiura adult worm transcriptome using Ion Torrent sequencing.
Leonardo N Santos, Eduardo S Silva, André S Santos, Pablo H De Sá, Rommel T Ramos

Acta Trop· July 2016

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Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows.
Luis Carlos Guimarães, Thiago Lopes, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro, Ana Lídia Queiroz Cavalcante, Henrique César Pereira Figueiredo

J Genomics· March 2016

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Erratum for Alves et al., Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil.
Jorianne T C Alves, Adonney A O Veras, Ana Lídia Q Cavalcante, Pablo H C G de Sá, Larissa M Dias

Genome Announc· March 2016

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Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil.
Jorianne T C Alves, Adonney A O Veras, Ana Lídia Q Cavalcante, Pablo H C G de Sá, Larissa M Dias

Genome Announc· January 2016

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Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.
Pablo H C G de Sá, Adonney A O Veras, Adriana R Carneiro, Rafael A Barúna, Luís C Guimarães

Data Brief· December 2015

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The impact of quality filter for RNA-Seq.
Pablo H C G de Sá, Adonney A O Veras, Adriana R Carneiro, Kenny C Pinheiro, Anne C Pinto

Gene· June 2015

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Draft Genome Sequences of Vibrio fluvialis Strains 560 and 539, Isolated from Environmental Samples.
Adonney Allan de Oliveira Veras, Miriam Lopes da Silva, Jaqueline Conceição Meireles Gomes, Larissa Maranhão Dias, Pablo Caracciolo Gomes de Sá

Genome Announc· January 2015

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Draft Genome Sequence of Non-O1 and Non-O139 Vibrio cholerae Strain VCC19.
Pablo Caracciolo Gomes de Sá, Miriam Lopes Da Silva, Adriana Ribeiro Carneiro, Jaqueline Conceição Meireles Gomes, Larissa Maranhão Dias, Maria Ines Zanolli Sato

Genome Announc· November 2014

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Genome Sequence of Corynebacterium pseudotuberculosis MB20 bv. equi Isolated from a Pectoral Abscess of an Oldenburg Horse in California.
Rafael A Baraúna, Luís C Guimarães, Adonney A O Veras, Pablo H C G de Sá, Diego A Graças

Genome Announc· November 2014

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Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation.
Hivana P M B Dall'Agnol, Rafael A Baraúna, Pablo H C G de Sá, Rommel T J Ramos, Felipe Nóbrega, Daniel M Santos

BMC Genomics· November 2014

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Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data.
Daiane M Carvalho, Pablo H de Sá, Thiago L P Castro, Rodrigo D Carvalho, Anne Pinto

Antonie Van Leeuwenhoek· October 2014

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Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses.
Anne Cybelle Pinto, Pablo Henrique Caracciolo Gomes de Sá, Rommel T J Ramos, Silvanira Barbosa, Hivana P Melo Barbosa, Mariana Passos Santana

BMC Genomics· January 2014

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Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the Bronchitic Aspiration of a Patient in France.
Andréia do Socorro de Sousa Silva, Rafael Azevedo Baraúna, Pablo Caracciolo Gomes de Sá, Diego Assis das Graças, Adriana Ribeiro Carneiro

Genome Announc· January 2014

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Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water.
Isabel Henriques, Rommel Thiago Jucá Ramos, Rafael Azevedo Baraúna, Pablo Henrique de Sá, Diogo Marinho Almeida, Silvanira Barbosa, Maria José Saavedra

Genome Announc· November 2013

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