Publications by authors named "Peter Simmonds"

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CpG dinucleotide enrichment in the influenza A virus genome as a live attenuated vaccine development strategy.
Colin P Sharp, Beth H Thompson, Tessa J Nash, Ola Diebold, Rute M Pinto, Luke Thorley, Yao-Tang Lin, Samantha Sives, Helen Wise, Sara Clohisey Hendry

PLoS Pathog· May 2023

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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025).
Peter Simmonds, Evelien M Adriaenssens, Elliot J Lefkowitz, Hanna M Oksanen, Francisco Murilo Zerbini

Arch Virol· December 2025

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Taxonomic expansion and reorganization of Flaviviridae.
Peter Simmonds, Anamarija Butković, Joe Grove, Richard Mayne, Jonathon C O Mifsud

Nat Microbiol· November 2025

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A blood safety perspective on emerging arboviral infections in the United Kingdom.
Piya Rajendra, Shannah Secret, Su Brailsford, Tanya Golubchik, Peter Simmonds

Transfus Med· November 2025

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Design and implementation of blood donor sample bioarchives to enhance preparedness for emerging and pandemic pathogens in England.
Shannah Secret, Peter Simmonds, Janie Olver, Piya Rajendra, Eilish Hart

Euro Surveill· November 2025

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Understanding off-target growth defects introduced to influenza A virus by synonymous recoding.
Colin P Sharp, Beth H Thompson, Ananya Ferdous Hoque, Ola Diebold, Blanka Tesla, Peter Simmonds

RNA· October 2025

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Design and nonviral delivery of live attenuated vaccine to prevent chronic hepatitis C virus-like infection.
Sheetal Trivedi, Piyush Dravid, Tim C Passchier, Satyapramod Murthy, Kripa Shanker Kasudhan, Peter Simmonds

Nat Commun· August 2025

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Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances.
Richard Mayne, Peter Simmonds, Donald B Smith, Evelien M Adriaenssens, Elliot J Lefkowitz

J Gen Virol· July 2025

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Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) - General taxonomy proposals, 2025.
F Murilo Zerbini, Anya Crane, Jens H Kuhn, Peter Simmonds, Elliot J Lefkowitz

J Gen Virol· July 2025

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Sustained circulation of enterovirus D68 in Europe in 2023 and the continued evolution of enterovirus D68 B3-lineages associated with distinct amino acid substitutions in VP1 protein.
Aurora Hirvonen, Caroline Klint Johannesen, Peter Simmonds, Thea K Fischer, Heli Harvala

J Clin Virol· June 2025

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Use of polyethylene glycol precipitation and ultracentrifugation to enhance the sensitivity of hepatitis B virus DNA detection.
Michael X Fu, Osmany Larralde, Richard Mayne, Kai Kean, Kaitlin Reid, Peter Simmonds

J Clin Virol· June 2025

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Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm : kingdom : phylum ).
Jens H Kuhn, Scott Adkins, Sergey V Alkhovsky, Wenxia An, Tatjana Avšič-Županc, Peter Simmonds

J Gen Virol· June 2025

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Virus species names have been standardized; virus names remain unchanged.
F Murilo Zerbini, Peter Simmonds, Evelien M Adriaenssens, Elliot J Lefkowitz, Hanna M Oksanen

mSphere· May 2025

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Occult hepatitis B virus infection: risk for a blood supply, but how about individuals' health?
Michael X Fu, Ahmed Elsharkawy, Brendan Healy, Celia Jackson, Daniel Bradshaw, Peter Simmonds

EClinicalMedicine· March 2025

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Quantifying the impact of a novel virus on the economic value of pathogen reduction technology for platelets.
Adam Irving, Peter Simmonds, William Irving, Stephen Thomas, James Neuberger

Transfusion· February 2025

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Individual patient and donor seroprofiles in convalescent plasma treatment of COVID-19 in REMAP-CAP clinical trial.
Visa Nurmi, Richard Mayne, Chanice Knight, Hannia L Almonacid-Mendoza, Shannah Secret, Peter Simmonds

J Infect· February 2025

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Seroprevalence of Borrelia burgdorferi sensu lato antibodies in English adult blood donors: A nationwide cross-sectional study, 2021-2022.
Eilish Hart, John Tulloch, Daniel Bailey, Tim Brooks, Heli Harvala, Peter Simmonds

Ticks Tick Borne Dis· January 2025

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Integrated analysis of protein sequence and structure redefines viral diversity and the taxonomy of the .
Peter Simmonds, Anamarija Butković, Joe Grove, Richard Mayne, Jonathon C O Mifsud

bioRxiv· January 2025

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C→U transition biases in SARS-CoV-2: still rampant 4 years from the start of the COVID-19 pandemic.
Peter Simmonds

mBio· December 2024

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GRAViTy-V2: a grounded viral taxonomy application.
Richard Mayne, Pakorn Aiewsakun, Dann Turner, Evelien M Adriaenssens, Peter Simmonds

NAR Genom Bioinform· December 2024

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Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome.
Lari Pyöriä, Diogo Pratas, Mari Toppinen, Peter Simmonds, Klaus Hedman

Nucleic Acids Res· November 2024

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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024).
Peter Simmonds, Evelien M Adriaenssens, Elliot J Lefkowitz, Hanna M Oksanen, Stuart G Siddell

Arch Virol· November 2024

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Enterovirus A71 and coxsackievirus A6 circulation in England, UK, 2006-2017: A mathematical modelling study using cross-sectional seroprevalence data.
Everlyn Kamau, Ben Lambert, David J Allen, Cristina Celma, Stuart Beard, Peter Simmonds

PLoS Pathog· November 2024

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A critique of the use of species and below-species taxonomic terms for viruses-time for change?
Peter Simmonds

Virus Evol· November 2024

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Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data.
Richard Mayne, Shannah Secret, Cyndi Geoghegan, Amy Trebes, Kai Kean, Peter Simmonds

Bioinformatics· October 2024

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A need for confirmatory testing of isolated HBcAb-positive results in screening programs.
Michael X Fu, Peter Simmonds, Heli Harvala

Hepatol Commun· October 2024

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