Publications by authors named "Rafik Neme"

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Tracing the dynamics of gene transcripts after organismal death.
Alex E Pozhitkov, Rafik Neme, Tomislav Domazet-Lošo, Brian G Leroux, Shivani Soni, Diethard Tautz, Peter A Noble

January 2017

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Diversity and efficacy of insect sampling methods in an urban tropical dry forest of the Colombian Caribbean.
Rodrigo Sarmiento-Garcés, Daniel Posada-Echeverría, Rafik Neme

PeerJ· May 2025

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SDRAP for annotating scrambled or rearranged genomes.
Jasper Braun, Rafik Neme, Yi Feng, Laura F Landweber, Nataša Jonoska

NAR Genom Bioinform· December 2023

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Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes.
Yi Feng, Rafik Neme, Leslie Y Beh, Xiao Chen, Jasper Braun

Elife· November 2022

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Transcribed germline-limited coding sequences in Oxytricha trifallax.
Richard V Miller, Rafik Neme, Derek M Clay, Jananan S Pathmanathan, Michael W Lu

G3 (Bethesda)· June 2021

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Boundary maintenance in the ancestral metazoan Hydra depends on histone acetylation.
Javier A López-Quintero, Guillermo G Torres, Rafik Neme, Thomas C G Bosch

Dev Biol· February 2020

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Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA.
V Talya Yerlici, Michael W Lu, Carla R Hoge, Richard V Miller, Rafik Neme

Nucleic Acids Res· October 2019

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Reply to 'No beneficial fitness effects of random peptides'.
Diethard Tautz, Rafik Neme

Nat Ecol Evol· July 2018

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Russian Doll Genes and Complex Chromosome Rearrangements in .
Jasper Braun, Lukas Nabergall, Rafik Neme, Laura F Landweber, Masahico Saito

G3 (Bethesda)· May 2018

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Random sequences are an abundant source of bioactive RNAs or peptides.
Rafik Neme, Cristina Amador, Burcin Yildirim, Ellen McConnell, Diethard Tautz

Nat Ecol Evol· June 2017

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Young Genes are Highly Disordered as Predicted by the Preadaptation Hypothesis of Gene Birth.
Benjamin A Wilson, Scott G Foy, Rafik Neme, Joanna Masel

Nat Ecol Evol· June 2017

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No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution.
Tomislav Domazet-Lošo, Anne-Ruxandra Carvunis, M Mar Albà, Martin Sebastijan Šestak, Robert Bakaric, Rafik Neme

Mol Biol Evol· April 2017

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Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus.
Bettina Harr, Emre Karakoc, Rafik Neme, Meike Teschke, Christine Pfeifle

Sci Data· September 2016

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The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.
Erik R Hanschen, Tara N Marriage, Patrick J Ferris, Takashi Hamaji, Atsushi Toyoda, Rafik Neme

Nat Commun· April 2016

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Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence.
Rafik Neme, Diethard Tautz

Elife· February 2016

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Identification and functional evaluation of Leishmania braziliensis Nicotinamide Mononucleotide Adenylyltransferase.
Luis E Contreras, Rafik Neme, María H Ramírez

Protein Expr Purif· November 2015

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Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency.
Richard N McLaughlin, Janet M Young, Lei Yang, Rafik Neme, Holly A Wichman

PLoS Genet· September 2014

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Evolution: dynamics of de novo gene emergence.
Rafik Neme, Diethard Tautz

Curr Biol· March 2014

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Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution.
Rafik Neme, Diethard Tautz

BMC Genomics· February 2013

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Plant microRNAs and their role in defense against viruses: a bioinformatics approach.
Alvaro L Pérez-Quintero, Rafik Neme, Andrés Zapata, Camilo López

BMC Plant Biol· July 2010

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