Publications by authors named "Saima Shahid"

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Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants.
Zhenzhen Yang, Eric K Wafula, Gunjune Kim, Saima Shahid, Joel R McNeal, Paula E Ralph, Prakash R Timilsena, Wen-Bin Yu, Elizabeth A Kelly, Huiting Zhang

Nat Plants· September 2019

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Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants.
Zhenzhen Yang, Eric K Wafula, Gunjune Kim, Saima Shahid, Joel R McNeal, Paula E Ralph, Prakash R Timilsena, Wen-Bin Yu, Elizabeth A Kelly, Huiting Zhang

Nat Plants· September 2019

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Experimental warming alters free-living nitrogen fixation in a humid tropical forest.
Parker M Bartz, Iana F Grullón-Penkova, Molly A Cavaleri, Sasha C Reed, Saima Shahid

New Phytol· December 2025

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Dowling-Degos Disease.
Moizza Tahir, Asma Malik, Saima Shahid

JAMA Dermatol· November 2025

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miRScore: A rapid and precise microRNA validation tool.
Allison Vanek, Sam Griffiths-Jones, Blake C Meyers, Saima Shahid, Michael J Axtell

PLoS Comput Biol· November 2025

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Comparison of safety and efficacy of Netarsudil 0.02% and Bimatoprost 0.01% monotherapy and combination therapy in primary open-angle glaucoma and ocular hypertension.
Saima Shahid, Syed Wajahat A Rizvi, Adeeb A Khan, Humayoun Ashraf, Afeefa Akhter

Indian J Ophthalmol· March 2024

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A Case of Neuroretinitis following Inactivated Virion COVID-19 Vaccination.
Gayathry S Nair, Iraj Alam Khan, Syed Wajahat Ali Rizvi, Saima Shahid

Ocul Immunol Inflamm· August 2023

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The Epigenetic Control of the Transposable Element Life Cycle in Plant Genomes and Beyond.
Peng Liu, Diego Cuerda-Gil, Saima Shahid, R Keith Slotkin

Annu Rev Genet· November 2022

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Sorghum anthracnose resistance: One MITE to rule them all.
Saima Shahid

Plant Cell· April 2022

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Hunting for TEs: MicroRNAs switch targets in developing pollen.
Saima Shahid

Plant Cell· February 2022

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The making and unmaking of the silenced chromatin.
Saima Shahid

Plant Cell· May 2021

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A DNA Methylation Reader with an Affinity for Salt Stress.
Saima Shahid

Plant Cell· November 2020

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On UPF Proteins, Baking Cookies, and the Many Targets of Nonsense-Mediated RNA Decay.
Saima Shahid

Plant Cell· September 2020

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Soybean aphids adapted to host-plant resistance by down regulating putative effectors and up regulating transposable elements.
Ashley D Yates-Stewart, Josquin Daron, Saranga Wijeratne, Saima Shahid, Hilary A Edgington

Insect Biochem Mol Biol· June 2020

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The current revolution in transposable element biology enabled by long reads.
Saima Shahid, R Keith Slotkin

Curr Opin Plant Biol· April 2020

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The Rules of Attachment: REC8 Cohesin Connects Chromatin Architecture and Recombination Machinery in Meiosis.
Saima Shahid

Plant Cell· April 2020

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To Be or Not To Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen's Response to Different Hosts.
Saima Shahid

Plant Cell· February 2020

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The RNA Export Factor ALY1 Enables Genome-Wide RNA-Directed DNA Methylation.
Sarah G Choudury, Saima Shahid, Diego Cuerda-Gil, Kaushik Panda, Alissa Cullen

Plant Cell· April 2019

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MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs.
Saima Shahid, Gunjune Kim, Nathan R Johnson, Eric Wafula, Feng Wang

Nature· January 2018

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Comparative genomics of two jute species and insight into fibre biogenesis.
Md Shahidul Islam, Jennifer A Saito, Emdadul Mannan Emdad, Borhan Ahmed, Mohammad Moinul Islam, Saima Shahid

Nat Plants· January 2017

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Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants.
Ceyda Coruh, Sung Hyun Cho, Saima Shahid, Qikun Liu, Andrzej Wierzbicki

Plant Cell· August 2015

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A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.
Chun Kit Kwok, Yiliang Ding, Saima Shahid, Sarah M Assmann, Philip C Bevilacqua

Biochem J· April 2015

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Identification and annotation of small RNA genes using ShortStack.
Saima Shahid, Michael J Axtell

Methods· May 2014

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Seeing the forest for the trees: annotating small RNA producing genes in plants.
Ceyda Coruh, Saima Shahid, Michael J Axtell

Curr Opin Plant Biol· April 2014

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Prediction of plant promoters based on hexamers and random triplet pair analysis.
A K M Azad, Saima Shahid, Nasimul Noman, Hyunju Lee

Algorithms Mol Biol· June 2011

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Physiology and gene expression of the rice landrace Horkuch under salt stress.
Laisa A Lisa, Sabrina M Elias, M Sazzadur Rahman, Saima Shahid, Tetsushi Iwasaki

Funct Plant Biol· April 2011

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