Publications by authors named "Se Jin Song"

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The human microbiome in evolution.
Emily R Davenport, Jon G Sanders, Se Jin Song, Katherine R Amato, Andrew G Clark, Rob Knight

BMC Biol· December 2017

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Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes.
Caitriona Brennan, Justin P Shaffer, Pedro Belda-Ferre, Ipsita Mohanty, Yuhan Weng, Se Jin Song

Microbiol Spectr· November 2025

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Calculating fast differential genome coverages among metagenomic sources using micov.
Yuhan Weng, Caitlin Guccione, Daniel McDonald, Renee Oles, Suzanne Devkota, Se Jin Song

Commun Biol· November 2025

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Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort.
Rohan Singh, Daniel McDonald, Alejandra Rios Hernandez, Se Jin Song, Andrew Bartko

Nat Commun· September 2025

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Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis.
Tyler Myers, Se Jin Song, Yang Chen, Britta De Pessemier, Lora Khatib

Commun Biol· August 2025

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A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population.
Lora Khatib, Se Jin Song, Amanda H Dilmore, Jon G Sanders, Caitriona Brennan

mSystems· July 2025

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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.
Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Se Jin Song

mBio· April 2025

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The impact of breastfeeding on the preterm infant's microbiome and metabolome: a pilot study.
Keriann Schulkers Escalante, Shiyu S Bai-Tong, Sarah M Allard, Gertrude Ecklu-Mensah, Concepcion Sanchez, Se Jin Song

Pediatr Res· February 2025

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ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias.
Shrikant Bhute, Jon G Sanders, Se Jin Song, Sydney Lavoie, Austin Swafford

Mol Biol Rep· February 2025

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Anthelmintic Treatment Reveals Sex-Dependent Worm-Gut Microbiota Interactions.
Kate A Sabey, Avina Castro, Se Jin Song, Rob Knight, Vanessa O Ezenwa

Parasite Immunol· December 2024

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Feasibility of Home Collection for Urogenital Microbiome Samples.
Emily S Lukacz, Cynthia S Fok, MacKenzie Bryant, Dulce P Rodriguez-Ponciano, Melanie R Meister, Se Jin Song

Urogynecology (Phila)· November 2024

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Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.
Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Se Jin Song

mSystems· October 2024

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Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal.
Bianca R P Brown, Allison E Williams, Kate A Sabey, Aaron Onserio, John Ewoi, Se Jin Song

Proc Biol Sci· October 2024

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Retraction Note: Microbiome analyses of blood and tissues suggest cancer diagnostic approach.
Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Se Jin Song

Nature· July 2024

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Greengenes2 unifies microbial data in a single reference tree.
Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Se Jin Song

Nat Biotechnol· May 2024

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Author Correction: Greengenes2 unifies microbial data in a single reference tree.
Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Se Jin Song

Nat Biotechnol· May 2024

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Correction: Robustness of cancer microbiome signals over a broad range of methodological variation.
Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, Se Jin Song

Oncogene· May 2024

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Robustness of cancer microbiome signals over a broad range of methodological variation.
Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, Se Jin Song

Oncogene· April 2024

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Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses.
Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald

Microbiol Spectr· January 2024

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A multi-study analysis enables identification of potential microbial features associated with skin aging signs.
Tyler Myers, Amina Bouslimani, Shi Huang, Shalisa T Hansen, Cécile Clavaud, Se Jin Song

Front Aging· January 2024

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Tomato salt-responsive pseudo-response regulator 1, SlSRP1, negatively regulates the high-salt and dehydration stress responses.
Yeongil Bae, Se Jin Song, Chae Woo Lim, Chul Min Kim, Sung Chul Lee

Physiol Plant· December 2023

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Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors.
Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song

Nat Commun· June 2023

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Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses.
Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald

mSystems· February 2023

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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Se Jin Song

Nat Microbiol· December 2022

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Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.
Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Se Jin Song

mSystems· October 2022

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The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps.
Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Se Jin Song

Front Nutr· September 2022

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