Publications by authors named "Shane A McCarthy"

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Genomics of cold adaptations in the Antarctic notothenioid fish radiation.
Iliana Bista, Jonathan M D Wood, Thomas Desvignes, Shane A McCarthy, Michael Matschiner, Zemin Ning, Alan Tracey, James Torrance, Ying Sims, William Chow

Nat Commun· June 2023

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The genome sequence of the Panther Danio, Kullander & Fang, 2009.
Kerstin Howe, Braedan McCluskey, Zoltan Varga, Bill Trevarrow, Shane A McCarthy

Wellcome Open Res· December 2025

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Two chromosomal reference genome sequences for the malaria mosquito, ( ) , Root, 1926 from French Guiana and Peru.
Mathilde Gendrin, Katy Heu, Marta Moreno, Dionicia Gamboa, Joseph M Vinetz, Shane A McCarthy

Wellcome Open Res· October 2025

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A chromosomal reference genome sequence for the malaria mosquito, , Theobald, 1904.
Sandrine Eveline Nsango, Diego Ayala, Jean-Pierre Agbor, Harriet F Johnson, Haynes Heaton, Shane A McCarthy

Wellcome Open Res· October 2025

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Forty new genomes shed light on sexual reproduction and the origin of tetraploidy in Microsporidia.
Amjad Khalaf, Chenxi Zhou, Claudia C Weber, Emmelien Vancaester, Ying Sims, Shane A McCarthy

PLoS Biol· October 2025

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Genomic and genetic insights into speciation and pigment pattern diversification in fishes.
Jianguo Lu, Marco Podobnik, Junrou Huang, Braedan M McCluskey, Shane A McCarthy

bioRxiv· October 2025

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The genome sequence of the zebra danio, (Hamilton, 1822) (Cypriniformes: Danionidae).
Kerstin Howe, Caroline Howard, Shane A McCarthy, Jonathan M D Wood,

Wellcome Open Res· September 2025

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Oatk: a de novo assembly tool for complex plant organelle genomes.
Chenxi Zhou, Max Brown, Mark Blaxter, , Shane A McCarthy

Genome Biol· August 2025

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A chromosomal reference genome sequence for the northern house mosquito, form , Linnaeus, 1758.
Jenny C Hesson, Yuki Haba, Carolyn S McBride, Edel Sheerin, Thomas C Mathers, Shane A McCarthy

Wellcome Open Res· February 2025

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The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates.
Hélène Mayeur, Jake Leyhr, John Mulley, Nicolas Leurs, Léo Michel, Shane A McCarthy

Mol Biol Evol· December 2024

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Genomic changes and stabilization following homoploid hybrid speciation of the Oxford ragwort Senecio squalidus.
Bruno Nevado, Mark A Chapman, Adrian C Brennan, James W Clark, Edgar L Y Wong, Shane A McCarthy

Curr Biol· October 2024

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Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
Ann M Mc Cartney, Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S Marins, Shane A McCarthy

NPJ Biodivers· October 2024

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The Hypolimnas misippus Genome Supports a Common Origin of the W Chromosome in Lepidoptera.
Anna Orteu, Shane A McCarthy, Emily A Hornett, Matthew R Gemmell, Louise A Reynolds

Genome Biol Evol· October 2024

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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
Ann M Mc Cartney, Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S Marins, Shane A McCarthy

NPJ Biodivers· September 2024

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Chromosomal reference genome sequences for the malaria mosquito, , Laveran, 1900.
Lemonde B A Bouafou, Diego Ayala, Boris K Makanga, Nil Rahola, Harriet F Johnson, Shane A McCarthy

Wellcome Open Res· September 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Theobald, 1903.
Boris K Makanga, Diego Ayala, Nil Rahola, Lemonde B A Bouafou, Harriet F Johnson, Shane A McCarthy

Wellcome Open Res· September 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Giles, 1902.
Nil Rahola, Diego Ayala, Lemonde B A Bouafou, Boris K Makanga, Harriet F Johnson, Shane A McCarthy

Wellcome Open Res· September 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Giles, 1902, Ifakara strain.
Tibebu Habtewold, Martin Wagah, Mgeni Mohamed Tambwe, Sarah Moore, Nikolai Windbichler, Shane A McCarthy

Wellcome Open Res· March 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Evans, 1925.
Sandrine N Nsango, Jean-Pierre Agbor, Diego Ayala, Harriet F Johnson, Haynes Heaton, Shane A McCarthy

Wellcome Open Res· November 2023

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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
Marcela Uliano-Silva, João Gabriel R N Ferreira, Ksenia Krasheninnikova, , Giulio Formenti, Shane A McCarthy

BMC Bioinformatics· July 2023

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Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians.
Vladimir Ovchinnikov, Marcela Uliano-Silva, Mark Wilkinson, Jonathan Wood, Michelle Smith, Shane A McCarthy

Mol Biol Evol· May 2023

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YaHS: yet another Hi-C scaffolding tool.
Chenxi Zhou, Shane A McCarthy, Richard Durbin

Bioinformatics· January 2023

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Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.
Dengfeng Guan, Shane A McCarthy, Zemin Ning, Guohua Wang, Yadong Wang

BMC Bioinformatics· December 2021

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Efficient iterative Hi-C scaffolder based on N-best neighbors.
Dengfeng Guan, Shane A McCarthy, Zemin Ning, Guohua Wang, Yadong Wang

BMC Bioinformatics· November 2021

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The genome sequence of the European water vole, Linnaeus 1758.
Angus I Carpenter, Michelle Smith, Craig Corton, Karen Oliver, Jason Skelton, Shane A McCarthy

Wellcome Open Res· June 2021

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