Publications by authors named "Simone Coughlan"

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Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowel Syndrome and Bile Acid Malabsorption.
Ian B Jeffery, Anubhav Das, Eileen O'Herlihy, Simone Coughlan, Katryna Cisek, Michael Moore, Fintan Bradley, Tom Carty, Meenakshi Pradhan, Chinmay Dwibedi

Gastroenterology· March 2020

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Healthcare-related transmission of mobile genetic elements co-carrying and 16S rRNA methyltransferase genes in multiple .
Mark Maguire, Carlos Serna, Jose F Delgado-Blas, Christina Clarke, Niall DeLappe, Simone C Coughlan

Microb Genom· August 2025

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Genomic and phylogenetic analysis of hypervirulent ST23 in Ireland.
Mark Maguire, Niall DeLappe, Christina Clarke, Alma Touhy, Ulrike Carlino-MacDonald, Simone C Coughlan

Microb Genom· March 2025

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Spatiotemporal and genomic analysis of carbapenem resistance elements in Enterobacterales from hospital inpatients and natural water ecosystems of an Irish city.
Mark Maguire, Carlos Serna, Natalia Montero Serra, Aneta Kovarova, Louise O'Connor, Simone C Coughlan

Microbiol Spectr· January 2025

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CDC7 inhibition drives an inflammatory response and a p53-dependent senescent-like state in breast epithelial cells.
Chiara Cazzaniga, Anja Göder, Michael David Rainey, Aisling Quinlan, Simone Coughlan

FEBS J· July 2024

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GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal.
Lydia King, Andrew Flaus, Simone Coughlan, Emma Holian, Aaron Golden

HRB Open Res· September 2022

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Volatile Compounds From , , and Promote Growth and Alter the Transcriptional Landscape of in a Passively Ventilated Growth System.
Darren Heenan-Daly, Simone Coughlan, Eileen Dillane, Barbara Doyle Prestwich

Front Microbiol· July 2021

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and reference genomes highlight genome structure and gene evolution in the subgenus.
Simone Coughlan, Ali Shirley Taylor, Eoghan Feane, Mandy Sanders, Gabriele Schonian

R Soc Open Sci· April 2018

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Tandem Amplification of the Staphylococcal Cassette Chromosome Element Can Drive High-Level Methicillin Resistance in Methicillin-Resistant Staphylococcus aureus.
Laura A Gallagher, Simone Coughlan, Nikki S Black, Pierce Lalor, Elaine M Waters

Antimicrob Agents Chemother· September 2017

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The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania.
Simone Coughlan, Peter Mulhair, Mandy Sanders, Gabriele Schonian, James A Cotton

Sci Rep· March 2017

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Developing educational resources for population genetics in R: an open and collaborative approach.
Zhian N Kamvar, Margarita M López-Uribe, Simone Coughlan, Niklaus J Grünwald, Hilmar Lapp

Mol Ecol Resour· January 2017

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Redeploying β-Lactam Antibiotics as a Novel Antivirulence Strategy for the Treatment of Methicillin-Resistant Staphylococcus aureus Infections.
Elaine M Waters, Justine K Rudkin, Simone Coughlan, Geremy C Clair, Joshua N Adkins

J Infect Dis· January 2017

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Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans.
B Anne Neville, Paul O Sheridan, Hugh M B Harris, Simone Coughlan, Harry J Flint

PLoS One· March 2014

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