Publications by authors named "Stefano Mangiola"

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Taurine deficiency as a driver of aging.
Parminder Singh, Kishore Gollapalli, Stefano Mangiola, Daniela Schranner, Mohd Aslam Yusuf, Manish Chamoli, Sting L Shi, Bruno Lopes Bastos, Tripti Nair, Annett Riermeier

June 2023

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Transcriptional signature of CD56 NK cells predicts favourable prognosis in bladder cancer.
Md Abdullah Al Kamran Khan, Alexander James Sedgwick, Yuhan Sun, Julian P Vivian, Alexandra J Corbett, Stefano Mangiola

Front Immunol· May 2025

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The Germline and Somatic Origins of Prostate Cancer Heterogeneity.
Takafumi N Yamaguchi, Kathleen E Houlahan, Helen Zhu, Natalie Kurganovs, Julie Livingstone, Stefano Mangiola

Cancer Discov· May 2025

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Deciphering Gut Microbiome in Colorectal Cancer via Robust Learning Methods.
Huiye Han, Ying Li, Youran Qi, Stefano Mangiola, Wodan Ling

Genes (Basel)· April 2025

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The tidyomics ecosystem: enhancing omic data analyses.
William J Hutchison, Timothy J Keyes, , Helena L Crowell, Jacques Serizay, Stefano Mangiola

Nat Methods· July 2024

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The ecosystem: Enhancing omic data analyses.
William J Hutchison, Timothy J Keyes, , Helena L Crowell, Jacques Serizay, Stefano Mangiola

bioRxiv· May 2024

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cellsig plug-in enhances CIBERSORTx signature selection for multidataset transcriptomes with sparse multilevel modelling.
Md Abdullah Al Kamran Khan, Jian Wu, Yuhan Sun, Alexander D Barrow, Anthony T Papenfuss, Stefano Mangiola

Bioinformatics· December 2023

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Single-cell RNA sequencing captures patient-level heterogeneity and associated molecular phenotypes in breast cancer pleural effusions.
Holly J Whitfield, Jean Berthelet, Stefano Mangiola, Caroline Bell, Robin L Anderson

Clin Transl Med· September 2023

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sccomp: Robust differential composition and variability analysis for single-cell data.
Stefano Mangiola, Alexandra J Roth-Schulze, Marie Trussart, Enrique Zozaya-Valdés, Mengyao Ma

Proc Natl Acad Sci U S A· August 2023

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Cell signaling activation and extracellular matrix remodeling underpin glioma tumor microenvironment heterogeneity and organization.
Marija Dinevska, Samuel S Widodo, Liam Furst, Lucero Cuzcano, Yitong Fang, Stefano Mangiola

Cell Oncol (Dordr)· June 2023

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and Expression Are Associated with Improved Prognosis in HPV-Infected Head and Neck Squamous Cell Carcinomas.
Yuhan Sun, Md Abdullah Al Kamran Khan, Stefano Mangiola, Alexander David Barrow

Pathogens· April 2023

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Somatic mutation landscape in a cohort of meningiomas that have undergone grade progression.
Sarah A Cain, Bernard Pope, Stefano Mangiola, Theo Mantamadiotis, Katharine J Drummond

BMC Cancer· March 2023

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A Transcriptional Signature of IL-2 Expanded Natural Killer Cells Predicts More Favorable Prognosis in Bladder Cancer.
Yuhan Sun, Alexander James Sedgwick, Md Abdullah-Al-Kamran Khan, Yaseelan Palarasah, Stefano Mangiola

Front Immunol· January 2022

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MSH2-deficient prostate tumours have a distinct immune response and clinical outcome compared to MSH2-deficient colorectal or endometrial cancer.
Patrick McCoy, Stefano Mangiola, Geoff Macintyre, Ryan Hutchinson, Ben Tran

Prostate Cancer Prostatic Dis· December 2021

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Interfacing Seurat with the R tidy universe.
Stefano Mangiola, Maria A Doyle, Anthony T Papenfuss

Bioinformatics· November 2021

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A Transcriptional Signature of PDGF-DD Activated Natural Killer Cells Predicts More Favorable Prognosis in Low-Grade Glioma.
Yuhan Sun, Alexander James Sedgwick, Yaseelan Palarasah, Stefano Mangiola, Alexander David Barrow

Front Immunol· October 2021

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Toward precision immunotherapy using multiplex immunohistochemistry and in silico methods to define the tumor immune microenvironment.
Samuel S Widodo, Ryan A Hutchinson, Yitong Fang, Stefano Mangiola, Paul J Neeson

Cancer Immunol Immunother· July 2021

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The site of breast cancer metastases dictates their clonal composition and reversible transcriptomic profile.
Jean Berthelet, Verena C Wimmer, Holly J Whitfield, Antonin Serrano, Thomas Boudier, Stefano Mangiola

Sci Adv· July 2021

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Transcriptome sequencing and multi-plex imaging of prostate cancer microenvironment reveals a dominant role for monocytic cells in progression.
Stefano Mangiola, Patrick McCoy, Martin Modrak, Fernando Souza-Fonseca-Guimaraes, Daniel Blashki

BMC Cancer· July 2021

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Loss of in Prostate Cancer Correlates With Clinical Response to Androgen Deprivation Therapy.
Marek Cmero, Natalie J Kurganovs, Ryan Stuchbery, Patrick McCoy, Corrina Grima, Stefano Mangiola

JCO Precis Oncol· June 2021

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Probabilistic outlier identification for RNA sequencing generalized linear models.
Stefano Mangiola, Evan A Thomas, Martin Modrák, Aki Vehtari, Anthony T Papenfuss

NAR Genom Bioinform· March 2021

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Combined BRAF, MEK, and CDK4/6 Inhibition Depletes Intratumoral Immune-Potentiating Myeloid Populations in Melanoma.
Emily J Lelliott, Stefano Mangiola, Kelly M Ramsbottom, Magnus Zethoven, Lydia Lim

Cancer Immunol Res· February 2021

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tidybulk: an R tidy framework for modular transcriptomic data analysis.
Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A Doyle, Anthony T Papenfuss

Genome Biol· January 2021

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Detection of ctDNA in plasma of patients with clinically localised prostate cancer is associated with rapid disease progression.
Edmund Lau, Patrick McCoy, Fairleigh Reeves, Ken Chow, Michael Clarkson, Stefano Mangiola

Genome Med· August 2020

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Prostate cancer cell-intrinsic interferon signaling regulates dormancy and metastatic outgrowth in bone.
Katie L Owen, Linden J Gearing, Damien J Zanker, Natasha K Brockwell, Weng Hua Khoo, Stefano Mangiola

EMBO Rep· June 2020

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