Publications by authors named "Swaraj Basu"

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Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain.
Giuseppe Petrosino, Giovanna Ponte, Massimiliano Volpe, Ilaria Zarrella, Federico Ansaloni, Concetta Langella, Giulia Di Cristina, Sara Finaurini, Monia T Russo, Swaraj Basu

BMC Biol· May 2022

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DamID transcriptional profiling identifies the Snail/Scratch transcription factor Kahuli as an Alk target in the Drosophila visceral mesoderm.
Patricia Mendoza-Garcia, Swaraj Basu, Sanjay Kumar Sukumar, Badrul Arefin, Georg Wolfstetter

Development· December 2021

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Deorphanization of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning.
Julia Morud, Iris Hardege, He Liu, Taihong Wu, Myung-Kyu Choi, Swaraj Basu

Curr Biol· October 2021

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Mitochondrial DNA variants in inclusion body myositis characterized by deep sequencing.
Carola Hedberg-Oldfors, Ulrika Lindgren, Swaraj Basu, Kittichate Visuttijai, Christopher Lindberg

Brain Pathol· May 2021

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Accurate mapping of mitochondrial DNA deletions and duplications using deep sequencing.
Swaraj Basu, Xie Xie, Jay P Uhler, Carola Hedberg-Oldfors, Dusanka Milenkovic

PLoS Genet· December 2020

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Deep sequencing of mitochondrial DNA and characterization of a novel mutation in a patient with arPEO.
Carola Hedberg-Oldfors, Bertil Macao, Swaraj Basu, Christopher Lindberg, Bradley Peter

Neurol Genet· February 2020

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A ceRNA Circuitry Involving the Long Noncoding RNA Klhl14-AS, Pax8, and Bcl2 Drives Thyroid Carcinogenesis.
Sara C Credendino, Maria L Bellone, Nicole Lewin, Elena Amendola, Remo Sanges, Swaraj Basu

Cancer Res· November 2019

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Copy-choice recombination during mitochondrial L-strand synthesis causes DNA deletions.
Örjan Persson, Yazh Muthukumar, Swaraj Basu, Louise Jenninger, Jay P Uhler

Nat Commun· February 2019

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Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi.
Alberto Amato, Valeria Sabatino, Göran M Nylund, Johanna Bergkvist, Swaraj Basu

ISME J· June 2018

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A Catalogue of Putative -Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors.
Swaraj Basu, Erik Larsson

G3 (Bethesda)· May 2018

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Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility.
Nasheeman Ashraf, Swaraj Basu, Kanika Narula, Sudip Ghosh, Rajul Tayal

Sci Rep· April 2018

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Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA.
Thomas J Nicholls, Cristina A Nadalutti, Elisa Motori, Ewen W Sommerville, Gráinne S Gorman, Swaraj Basu

Mol Cell· January 2018

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Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse.
Sara Carmela Credendino, Nicole Lewin, Miriane de Oliveira, Swaraj Basu, Barbara D'Andrea

Int J Genomics· September 2017

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Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.
Swaraj Basu, Shrikant Patil, Daniel Mapleson, Monia Teresa Russo, Laura Vitale

New Phytol· July 2017

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Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution.
Jimmy Van den Eynden, Swaraj Basu, Erik Larsson

PLoS Genet· December 2016

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The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome.
Swaraj Basu, Yavor Hadzhiev, Giuseppe Petrosino, Chirag Nepal, Jochen Gehrig

Sci Rep· September 2016

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Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis.
Shoib Ahmad Baba, Tabasum Mohiuddin, Swaraj Basu, Mohit Kumar Swarnkar, Aubid Hussain Malik

BMC Genomics· September 2015

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Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.
Francesco Musacchia, Swaraj Basu, Giuseppe Petrosino, Marco Salvemini, Remo Sanges

Bioinformatics· July 2015

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Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.
Swaraj Basu, Ferenc Müller, Remo Sanges

BMC Bioinformatics· December 2013

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Comparative proteomics reveals a role for seed storage protein AmA1 in cellular growth, development, and nutrient accumulation.
Lalit Agrawal, Kanika Narula, Swaraj Basu, Shubhendu Shekhar, Sudip Ghosh

J Proteome Res· November 2013

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Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development.
Remo Sanges, Yavor Hadzhiev, Marion Gueroult-Bellone, Agnes Roure, Marco Ferg, Swaraj Basu

Nucleic Acids Res· April 2013

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Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity.
Nasheeman Ashraf, Deepali Ghai, Pranjan Barman, Swaraj Basu, Nagaraju Gangisetty

BMC Genomics· September 2009

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